Hb_000933_140

Information

Type -
Description -
Location Contig933: 213578-223334
Sequence    

Annotation

kegg
ID rcu:RCOM_1622190
description hypothetical protein
nr
ID XP_012067718.1
description PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
swissprot
ID O26153
description Isopentenyl phosphate kinase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_47 PE=1 SV=1
trembl
ID B9RCY5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1622190 PE=4 SV=1
Gene Ontology
ID GO:0016740
description amino acid kinase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62902: 213363-214265 , PASA_asmbl_62903: 214268-223710 , PASA_asmbl_62904: 214522-223710 , PASA_asmbl_62905: 215982-216325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_140 0.0 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
2 Hb_008016_010 0.0857685898 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
3 Hb_026048_090 0.0907806173 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001437_040 0.0909506859 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
5 Hb_007992_030 0.0963689228 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
6 Hb_002518_250 0.0988602716 - - conserved hypothetical protein 10 [Hevea brasiliensis]
7 Hb_098709_010 0.0998869691 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
8 Hb_000345_560 0.1041175686 - - -
9 Hb_003055_050 0.1057763211 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
10 Hb_000175_520 0.1066562685 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_003327_060 0.1067249649 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
12 Hb_000193_230 0.1086525464 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
13 Hb_002942_030 0.1089527645 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
14 Hb_007317_220 0.1093705827 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
15 Hb_000085_340 0.1102810601 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
16 Hb_008408_030 0.1112816849 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
17 Hb_017134_040 0.1119326212 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
18 Hb_009510_030 0.1121462359 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
19 Hb_001493_100 0.1127419264 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
20 Hb_002067_160 0.1131823753 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_000933_140 Hb_000933_140 Hb_008016_010 Hb_008016_010 Hb_000933_140--Hb_008016_010 Hb_026048_090 Hb_026048_090 Hb_000933_140--Hb_026048_090 Hb_001437_040 Hb_001437_040 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_002518_250 Hb_002518_250 Hb_000933_140--Hb_002518_250 Hb_098709_010 Hb_098709_010 Hb_000933_140--Hb_098709_010 Hb_008016_010--Hb_001437_040 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_005348_080 Hb_005348_080 Hb_008016_010--Hb_005348_080 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_004502_030 Hb_004502_030 Hb_007992_030--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_000175_520 Hb_000175_520 Hb_002518_250--Hb_000175_520 Hb_002518_250--Hb_003453_010 Hb_002518_250--Hb_001437_040 Hb_017895_050 Hb_017895_050 Hb_002518_250--Hb_017895_050 Hb_004852_020 Hb_004852_020 Hb_002518_250--Hb_004852_020 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.5176 3.24234 5.42944 7.48788 73.4282 94.9446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.61 69.7628 44.7495 6.98781 3.93707

CAGE analysis