Hb_000933_170

Information

Type -
Description -
Location Contig933: 255582-258488
Sequence    

Annotation

kegg
ID rcu:RCOM_1622050
description hypothetical protein
nr
ID XP_012067726.1
description PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID A0A067LB04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62918: 255643-258411 , PASA_asmbl_62919: 257654-258169
cDNA
(Sanger)
(ID:Location)		 001_O21.ab1: 255673-258411 , 004_I02.ab1: 255667-258411 , 012_A06.ab1: 255673-258411 , 016_D03.ab1: 255727-258408 , 040_G24.ab1: 255671-258411 , 043_K17.ab1: 255698-258402

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_170 0.0 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
2 Hb_001269_660 0.1258843216 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
3 Hb_000910_060 0.135196914 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_002518_230 0.1388191997 - - -
5 Hb_001143_210 0.1395204862 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
6 Hb_149507_010 0.142319172 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
7 Hb_012395_060 0.1446681483 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
8 Hb_010264_010 0.1463533147 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
9 Hb_002374_510 0.1475471314 - - Esterase precursor, putative [Ricinus communis]
10 Hb_000417_400 0.1572265469 - - PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
11 Hb_113766_010 0.1593942155 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
12 Hb_001913_040 0.1594960252 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002750_040 0.1596376229 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
14 Hb_006992_010 0.1615203125 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_001277_010 0.1626758005 - - unknown [Populus trichocarpa]
16 Hb_000077_100 0.1636493967 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
17 Hb_000017_140 0.1639008935 - - polygalacturonase, putative [Ricinus communis]
18 Hb_003052_080 0.1640510405 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
19 Hb_001404_070 0.1651989982 - - sucrose synthase 4 [Hevea brasiliensis]
20 Hb_002370_020 0.1681576337 - - hypothetical protein JCGZ_19971 [Jatropha curcas]

Gene co-expression network

sample Hb_000933_170 Hb_000933_170 Hb_001269_660 Hb_001269_660 Hb_000933_170--Hb_001269_660 Hb_000910_060 Hb_000910_060 Hb_000933_170--Hb_000910_060 Hb_002518_230 Hb_002518_230 Hb_000933_170--Hb_002518_230 Hb_001143_210 Hb_001143_210 Hb_000933_170--Hb_001143_210 Hb_149507_010 Hb_149507_010 Hb_000933_170--Hb_149507_010 Hb_012395_060 Hb_012395_060 Hb_000933_170--Hb_012395_060 Hb_001269_660--Hb_149507_010 Hb_001269_660--Hb_012395_060 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_001277_010 Hb_001277_010 Hb_001269_660--Hb_001277_010 Hb_001269_660--Hb_002518_230 Hb_009252_070 Hb_009252_070 Hb_000910_060--Hb_009252_070 Hb_000910_060--Hb_001269_660 Hb_000910_060--Hb_012395_060 Hb_000103_440 Hb_000103_440 Hb_000910_060--Hb_000103_440 Hb_136408_040 Hb_136408_040 Hb_000910_060--Hb_136408_040 Hb_005295_020 Hb_005295_020 Hb_000910_060--Hb_005295_020 Hb_004466_090 Hb_004466_090 Hb_002518_230--Hb_004466_090 Hb_002518_230--Hb_012395_060 Hb_000193_070 Hb_000193_070 Hb_002518_230--Hb_000193_070 Hb_000152_570 Hb_000152_570 Hb_002518_230--Hb_000152_570 Hb_004374_030 Hb_004374_030 Hb_002518_230--Hb_004374_030 Hb_000017_140 Hb_000017_140 Hb_002518_230--Hb_000017_140 Hb_001143_210--Hb_149507_010 Hb_001143_210--Hb_001269_660 Hb_001143_210--Hb_010264_010 Hb_006992_010 Hb_006992_010 Hb_001143_210--Hb_006992_010 Hb_002370_020 Hb_002370_020 Hb_001143_210--Hb_002370_020 Hb_149507_010--Hb_002370_020 Hb_149507_010--Hb_012395_060 Hb_149507_010--Hb_001277_010 Hb_025623_010 Hb_025623_010 Hb_149507_010--Hb_025623_010 Hb_000866_400 Hb_000866_400 Hb_149507_010--Hb_000866_400 Hb_169077_030 Hb_169077_030 Hb_012395_060--Hb_169077_030 Hb_004804_010 Hb_004804_010 Hb_012395_060--Hb_004804_010 Hb_001534_140 Hb_001534_140 Hb_012395_060--Hb_001534_140 Hb_138585_010 Hb_138585_010 Hb_012395_060--Hb_138585_010 Hb_012395_060--Hb_000152_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2232 0.672208 9.89062 30.8403 0.481377 0.582393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.333097 0.0436601 0.239875 8.67209 25.405

CAGE analysis