Hb_000933_180

Information

Type -
Description -
Location Contig933: 260740-262655
Sequence    

Annotation

kegg
ID rcu:RCOM_1622040
description Chorismate mutase, chloroplast precursor, putative (EC:5.4.99.5)
nr
ID XP_012067727.1
description PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9C544
description Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana GN=CM3 PE=1 SV=1
trembl
ID A0A067L9V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15667 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chorismate mutase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62920: 260830-261916 , PASA_asmbl_62921: 260830-261916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_180 0.0 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
2 Hb_009767_120 0.0551941852 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
3 Hb_011360_140 0.0588575476 - - 40S ribosomal protein S19, putative [Ricinus communis]
4 Hb_000107_050 0.0597679807 - - 60S ribosomal protein L9, putative [Ricinus communis]
5 Hb_000494_020 0.0650540299 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
6 Hb_002233_150 0.0731121229 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
7 Hb_010128_130 0.0731743526 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
8 Hb_000000_160 0.0764540697 - - PREDICTED: membrin-11 [Jatropha curcas]
9 Hb_010661_030 0.0768196977 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
10 Hb_002893_060 0.0786290447 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
11 Hb_000742_140 0.079048151 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000661_250 0.0796896075 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
13 Hb_003878_190 0.0823362877 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
14 Hb_005993_040 0.0829428263 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
15 Hb_001369_650 0.0832262644 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
16 Hb_001259_090 0.0833545996 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
17 Hb_011828_050 0.0856301247 - - 40S ribosomal protein S23, putative [Ricinus communis]
18 Hb_000473_040 0.0857350269 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
19 Hb_003050_080 0.0862048953 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_001540_010 0.0863179098 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]

Gene co-expression network

sample Hb_000933_180 Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_000107_050--Hb_010128_130 Hb_011794_090 Hb_011794_090 Hb_000107_050--Hb_011794_090 Hb_001741_140 Hb_001741_140 Hb_000107_050--Hb_001741_140 Hb_000107_050--Hb_000494_020 Hb_000107_050--Hb_000690_080 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_010128_130--Hb_001741_140 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9302 5.75295 8.53863 6.43561 17.6683 19.2172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9714 27.0384 9.49886 7.85218 4.48817

CAGE analysis