Hb_000934_030

Information

Type -
Description -
Location Contig934: 38321-42832
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62928: 38478-40387
cDNA
(Sanger)
(ID:Location)		 012_P21.ab1: 38492-40387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_030 0.0 - - -
2 Hb_001349_010 0.0765937611 - - -
3 Hb_042729_010 0.1136332384 - - -
4 Hb_000363_010 0.1254303773 - - -
5 Hb_004882_020 0.1377293934 - - -
6 Hb_002936_050 0.140771557 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
7 Hb_005618_040 0.1427054555 - - -
8 Hb_000085_300 0.1437565999 - - -
9 Hb_001153_200 0.1439298784 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
10 Hb_000733_030 0.1459415727 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
11 Hb_025087_010 0.1460990632 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
12 Hb_002897_060 0.1469753257 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
13 Hb_001437_240 0.1474594231 - - -
14 Hb_004907_130 0.1478104591 - - -
15 Hb_003751_120 0.14896671 - - -
16 Hb_012366_020 0.1510314353 - - unnamed protein product [Vitis vinifera]
17 Hb_030765_020 0.1549172105 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_007245_090 0.1560949453 - - -
19 Hb_001198_030 0.1612007083 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
20 Hb_000143_050 0.1617743696 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000934_030 Hb_000934_030 Hb_001349_010 Hb_001349_010 Hb_000934_030--Hb_001349_010 Hb_042729_010 Hb_042729_010 Hb_000934_030--Hb_042729_010 Hb_000363_010 Hb_000363_010 Hb_000934_030--Hb_000363_010 Hb_004882_020 Hb_004882_020 Hb_000934_030--Hb_004882_020 Hb_002936_050 Hb_002936_050 Hb_000934_030--Hb_002936_050 Hb_005618_040 Hb_005618_040 Hb_000934_030--Hb_005618_040 Hb_001198_030 Hb_001198_030 Hb_001349_010--Hb_001198_030 Hb_000733_030 Hb_000733_030 Hb_001349_010--Hb_000733_030 Hb_001349_010--Hb_042729_010 Hb_025087_010 Hb_025087_010 Hb_001349_010--Hb_025087_010 Hb_001722_040 Hb_001722_040 Hb_001349_010--Hb_001722_040 Hb_004206_030 Hb_004206_030 Hb_042729_010--Hb_004206_030 Hb_042729_010--Hb_002936_050 Hb_012725_110 Hb_012725_110 Hb_042729_010--Hb_012725_110 Hb_000419_040 Hb_000419_040 Hb_042729_010--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_042729_010--Hb_000003_840 Hb_001143_090 Hb_001143_090 Hb_000363_010--Hb_001143_090 Hb_003878_030 Hb_003878_030 Hb_000363_010--Hb_003878_030 Hb_000363_010--Hb_042729_010 Hb_002392_040 Hb_002392_040 Hb_000363_010--Hb_002392_040 Hb_001153_200 Hb_001153_200 Hb_000363_010--Hb_001153_200 Hb_000809_040 Hb_000809_040 Hb_004882_020--Hb_000809_040 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_001981_090 Hb_001981_090 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_001366_220 Hb_001366_220 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280 Hb_002936_050--Hb_000419_040 Hb_002936_050--Hb_000003_840 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_005618_040--Hb_025087_010 Hb_005618_040--Hb_001153_200 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02924 0.920826 0.0654982 0 3.34997 1.35899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47104 5.29805 5.03302 1.29477 0.10539

CAGE analysis