Hb_000934_150

Information

Type -
Description -
Location Contig934: 112549-113844
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21000g
description POPTRDRAFT_862463; hypothetical protein
nr
ID XP_002307478.2
description hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
swissprot
ID Q84VY3
description Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES6 PE=2 SV=2
trembl
ID B9H7N5
description Acyl-[acyl-carrier-protein] desaturase OS=Populus trichocarpa GN=POPTR_0005s21000g PE=3 SV=2
Gene Ontology
ID GO:0009507
description acyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62933: 112562-113830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_150 0.0 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
2 Hb_000307_220 0.1500688741 - - oxidoreductase family protein [Populus trichocarpa]
3 Hb_002518_090 0.1515851187 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
4 Hb_006970_130 0.1545796755 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
5 Hb_003580_010 0.1568485384 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
6 Hb_023226_030 0.1611712098 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
7 Hb_001080_050 0.1615964245 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
8 Hb_000566_130 0.1629667668 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
9 Hb_172706_020 0.1651262695 - - PREDICTED: protein ABIL2 [Jatropha curcas]
10 Hb_000940_210 0.1661246794 - - cyclophilin [Hevea brasiliensis]
11 Hb_000077_110 0.1679899436 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
12 Hb_093458_020 0.1690382434 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
13 Hb_005271_140 0.1764480078 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
14 Hb_000077_440 0.1803998266 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
15 Hb_004920_050 0.1806104964 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
16 Hb_000003_060 0.1818675191 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
17 Hb_004968_040 0.1822813637 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
18 Hb_000581_030 0.1857692098 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000237_020 0.186175142 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
20 Hb_010436_080 0.1889563631 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_150 Hb_000934_150 Hb_000307_220 Hb_000307_220 Hb_000934_150--Hb_000307_220 Hb_002518_090 Hb_002518_090 Hb_000934_150--Hb_002518_090 Hb_006970_130 Hb_006970_130 Hb_000934_150--Hb_006970_130 Hb_003580_010 Hb_003580_010 Hb_000934_150--Hb_003580_010 Hb_023226_030 Hb_023226_030 Hb_000934_150--Hb_023226_030 Hb_001080_050 Hb_001080_050 Hb_000934_150--Hb_001080_050 Hb_000077_110 Hb_000077_110 Hb_000307_220--Hb_000077_110 Hb_000237_020 Hb_000237_020 Hb_000307_220--Hb_000237_020 Hb_000566_130 Hb_000566_130 Hb_000307_220--Hb_000566_130 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000581_030 Hb_000581_030 Hb_000307_220--Hb_000581_030 Hb_000307_220--Hb_002518_090 Hb_002518_090--Hb_172706_020 Hb_000940_210 Hb_000940_210 Hb_002518_090--Hb_000940_210 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_000309_030 Hb_000309_030 Hb_002518_090--Hb_000309_030 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_000288_090 Hb_000288_090 Hb_006970_130--Hb_000288_090 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040 Hb_003580_010--Hb_004968_040 Hb_003580_010--Hb_006970_130 Hb_001510_040 Hb_001510_040 Hb_003580_010--Hb_001510_040 Hb_001823_090 Hb_001823_090 Hb_003580_010--Hb_001823_090 Hb_003580_010--Hb_005271_140 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_023226_030--Hb_172706_020 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_093458_020 Hb_093458_020 Hb_001080_050--Hb_093458_020 Hb_001080_050--Hb_000307_220 Hb_124677_030 Hb_124677_030 Hb_001080_050--Hb_124677_030 Hb_000003_060 Hb_000003_060 Hb_001080_050--Hb_000003_060 Hb_001080_050--Hb_000566_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77109 2.63216 13.2957 11.8989 0.254617 0.758858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.563491 2.5962 0.176754 6.0237 1.57316

CAGE analysis