Hb_000934_170

Information

Type -
Description -
Location Contig934: 132715-136404
Sequence    

Annotation

kegg
ID rcu:RCOM_0138590
description alcohol dehydrogenase, putative (EC:1.1.1.284)
nr
ID XP_002526167.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID P25141
description Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1
trembl
ID B9SJJ8
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0138590 PE=3 SV=1
Gene Ontology
ID GO:0004022
description alcohol dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_170 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_002749_070 0.0974338351 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
3 Hb_004544_070 0.103862937 - - unnamed protein product [Vitis vinifera]
4 Hb_001758_120 0.1131451947 - - unnamed protein product [Vitis vinifera]
5 Hb_000347_530 0.1138985522 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
6 Hb_006637_040 0.1145294519 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
7 Hb_164283_010 0.118392566 - - hypothetical protein RCOM_0725500 [Ricinus communis]
8 Hb_018591_010 0.1196610682 - - kinase, putative [Ricinus communis]
9 Hb_000438_190 0.1213880803 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
10 Hb_011145_020 0.1222645785 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
11 Hb_002475_070 0.131219707 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
12 Hb_001104_200 0.1326208159 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
13 Hb_000911_050 0.1351215332 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
14 Hb_159015_010 0.1363499351 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_003893_100 0.1366419647 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
16 Hb_012368_080 0.1386416767 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
17 Hb_000580_070 0.1408793698 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
18 Hb_018133_110 0.1414729766 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000204_030 0.143687479 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_000032_560 0.1463297776 - - hypothetical protein JCGZ_15037 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_170 Hb_000934_170 Hb_002749_070 Hb_002749_070 Hb_000934_170--Hb_002749_070 Hb_004544_070 Hb_004544_070 Hb_000934_170--Hb_004544_070 Hb_001758_120 Hb_001758_120 Hb_000934_170--Hb_001758_120 Hb_000347_530 Hb_000347_530 Hb_000934_170--Hb_000347_530 Hb_006637_040 Hb_006637_040 Hb_000934_170--Hb_006637_040 Hb_164283_010 Hb_164283_010 Hb_000934_170--Hb_164283_010 Hb_002749_070--Hb_004544_070 Hb_002749_070--Hb_164283_010 Hb_011145_020 Hb_011145_020 Hb_002749_070--Hb_011145_020 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_018591_010 Hb_018591_010 Hb_002749_070--Hb_018591_010 Hb_000438_190 Hb_000438_190 Hb_002749_070--Hb_000438_190 Hb_004544_070--Hb_164283_010 Hb_004544_070--Hb_018591_010 Hb_004544_070--Hb_000438_190 Hb_004544_070--Hb_011145_020 Hb_004544_070--Hb_006637_040 Hb_001758_120--Hb_006637_040 Hb_003893_100 Hb_003893_100 Hb_001758_120--Hb_003893_100 Hb_000797_030 Hb_000797_030 Hb_001758_120--Hb_000797_030 Hb_001758_120--Hb_002749_070 Hb_003097_200 Hb_003097_200 Hb_001758_120--Hb_003097_200 Hb_001758_120--Hb_164283_010 Hb_000347_530--Hb_018591_010 Hb_000347_530--Hb_004544_070 Hb_002301_420 Hb_002301_420 Hb_000347_530--Hb_002301_420 Hb_000347_530--Hb_002749_070 Hb_010407_120 Hb_010407_120 Hb_000347_530--Hb_010407_120 Hb_006637_040--Hb_164283_010 Hb_006637_040--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_006637_040--Hb_008418_010 Hb_006637_040--Hb_000797_030 Hb_012368_080 Hb_012368_080 Hb_006637_040--Hb_012368_080 Hb_164283_010--Hb_018591_010 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_011145_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0934888 1.0579 1.32566 3.92784 0.0291902 0.0432966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.223659 0.156858 19.6507 0.989339

CAGE analysis