Hb_000934_190

Information

Type -
Description -
Location Contig934: 151098-155676
Sequence    

Annotation

kegg
ID tcc:TCM_015504
description SER/ARG-rich protein 34A
nr
ID XP_007039195.1
description SER/ARG-rich protein 34A [Theobroma cacao]
swissprot
ID A2RVS6
description Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1
trembl
ID A0A061G2B7
description SER/ARG-rich protein 34A OS=Theobroma cacao GN=TCM_015504 PE=3 SV=1
Gene Ontology
ID GO:0005730
description serine arginine-rich splicing factor sr34a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62935: 151079-155527 , PASA_asmbl_62936: 151143-155660 , PASA_asmbl_62937: 151297-155527 , PASA_asmbl_62938: 151375-155412
cDNA
(Sanger)
(ID:Location)		 045_E02.ab1: 151420-153956

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_190 0.0 - - SER/ARG-rich protein 34A [Theobroma cacao]
2 Hb_003622_040 0.0721893335 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
3 Hb_000673_020 0.075592618 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
4 Hb_005098_030 0.0782748921 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
5 Hb_008232_010 0.0809139567 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
6 Hb_000982_080 0.0821252319 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
7 Hb_003462_120 0.087368761 - - Acidic endochitinase [Theobroma cacao]
8 Hb_002016_080 0.0896641403 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
9 Hb_001123_160 0.092933161 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000175_030 0.094510966 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
11 Hb_004672_010 0.0947640621 - - ecotropic viral integration site, putative [Ricinus communis]
12 Hb_011344_190 0.0952309647 - - PREDICTED: maspardin [Jatropha curcas]
13 Hb_000300_430 0.0986358876 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
14 Hb_027654_050 0.0988923644 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
15 Hb_003360_040 0.0993843858 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
16 Hb_011671_460 0.0998599213 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
17 Hb_015183_060 0.1010815745 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
18 Hb_002119_130 0.1017387967 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
19 Hb_000413_280 0.102700392 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
20 Hb_013405_140 0.1033181211 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_190 Hb_000934_190 Hb_003622_040 Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_000673_020 Hb_000673_020 Hb_000934_190--Hb_000673_020 Hb_005098_030 Hb_005098_030 Hb_000934_190--Hb_005098_030 Hb_008232_010 Hb_008232_010 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_003462_120 Hb_003462_120 Hb_000934_190--Hb_003462_120 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_003622_040--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_003622_040--Hb_011344_190 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_004679_050 Hb_004679_050 Hb_005098_030--Hb_004679_050 Hb_011671_450 Hb_011671_450 Hb_005098_030--Hb_011671_450 Hb_002119_130 Hb_002119_130 Hb_005098_030--Hb_002119_130 Hb_017131_010 Hb_017131_010 Hb_005098_030--Hb_017131_010 Hb_005098_030--Hb_003622_040 Hb_008232_010--Hb_000982_080 Hb_008232_010--Hb_001123_160 Hb_008232_010--Hb_011344_190 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_003376_250 Hb_003376_250 Hb_000982_080--Hb_003376_250 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_001481_140 Hb_001481_140 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_003462_120--Hb_004672_010 Hb_003462_120--Hb_000175_030 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.41702 8.50438 16.6365 21.0894 6.59077 7.84184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2197 31.0972 38.3404 25.2084 18.003

CAGE analysis