Hb_000934_200

Information

Type -
Description -
Location Contig934: 155696-158584
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02880g
description POPTRDRAFT_569617; transducin family protein
nr
ID XP_012072048.1
description PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1B4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05799 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62941: 155947-158680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_200 0.0 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
2 Hb_006570_020 0.2250508705 - - -
3 Hb_005488_050 0.2270474544 - - PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus]
4 Hb_029921_010 0.2362619588 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
5 Hb_000438_170 0.241140745 - - -
6 Hb_000788_130 0.2472091284 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
7 Hb_005271_070 0.2536899126 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
8 Hb_002900_140 0.2561769226 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_000058_040 0.2568928461 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
10 Hb_000997_270 0.2574716229 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
11 Hb_001105_190 0.2583367716 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
12 Hb_142522_010 0.2586278026 - - -
13 Hb_007904_090 0.2587334714 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
14 Hb_006452_190 0.2589286501 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
15 Hb_000032_060 0.2602461824 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004204_090 0.2609004821 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
17 Hb_001021_230 0.2618225461 - - -
18 Hb_000376_160 0.2619284303 - - -
19 Hb_068804_150 0.2623929082 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000705_300 0.2646115494 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_200 Hb_000934_200 Hb_006570_020 Hb_006570_020 Hb_000934_200--Hb_006570_020 Hb_005488_050 Hb_005488_050 Hb_000934_200--Hb_005488_050 Hb_029921_010 Hb_029921_010 Hb_000934_200--Hb_029921_010 Hb_000438_170 Hb_000438_170 Hb_000934_200--Hb_000438_170 Hb_000788_130 Hb_000788_130 Hb_000934_200--Hb_000788_130 Hb_005271_070 Hb_005271_070 Hb_000934_200--Hb_005271_070 Hb_010449_020 Hb_010449_020 Hb_006570_020--Hb_010449_020 Hb_000270_360 Hb_000270_360 Hb_006570_020--Hb_000270_360 Hb_027892_060 Hb_027892_060 Hb_006570_020--Hb_027892_060 Hb_004070_030 Hb_004070_030 Hb_006570_020--Hb_004070_030 Hb_001105_190 Hb_001105_190 Hb_006570_020--Hb_001105_190 Hb_015026_120 Hb_015026_120 Hb_006570_020--Hb_015026_120 Hb_000268_090 Hb_000268_090 Hb_005488_050--Hb_000268_090 Hb_000933_150 Hb_000933_150 Hb_005488_050--Hb_000933_150 Hb_009111_040 Hb_009111_040 Hb_005488_050--Hb_009111_040 Hb_001014_010 Hb_001014_010 Hb_005488_050--Hb_001014_010 Hb_005488_050--Hb_000270_360 Hb_002900_140 Hb_002900_140 Hb_029921_010--Hb_002900_140 Hb_068804_150 Hb_068804_150 Hb_029921_010--Hb_068804_150 Hb_000982_110 Hb_000982_110 Hb_029921_010--Hb_000982_110 Hb_000997_270 Hb_000997_270 Hb_029921_010--Hb_000997_270 Hb_001005_090 Hb_001005_090 Hb_029921_010--Hb_001005_090 Hb_005892_060 Hb_005892_060 Hb_029921_010--Hb_005892_060 Hb_000462_140 Hb_000462_140 Hb_000438_170--Hb_000462_140 Hb_000789_090 Hb_000789_090 Hb_000438_170--Hb_000789_090 Hb_000109_090 Hb_000109_090 Hb_000438_170--Hb_000109_090 Hb_002284_090 Hb_002284_090 Hb_000438_170--Hb_002284_090 Hb_000710_010 Hb_000710_010 Hb_000438_170--Hb_000710_010 Hb_028347_010 Hb_028347_010 Hb_000438_170--Hb_028347_010 Hb_003371_180 Hb_003371_180 Hb_000788_130--Hb_003371_180 Hb_188209_010 Hb_188209_010 Hb_000788_130--Hb_188209_010 Hb_000789_070 Hb_000789_070 Hb_000788_130--Hb_000789_070 Hb_000160_130 Hb_000160_130 Hb_000788_130--Hb_000160_130 Hb_013405_060 Hb_013405_060 Hb_000788_130--Hb_013405_060 Hb_006018_040 Hb_006018_040 Hb_000788_130--Hb_006018_040 Hb_011537_040 Hb_011537_040 Hb_005271_070--Hb_011537_040 Hb_000258_410 Hb_000258_410 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_004374_010 Hb_004374_010 Hb_005271_070--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.298879 0.156549 0.157502 0 0.200988 0.262775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.536332 0.158145 0 0.0213333 0.105871

CAGE analysis