Hb_000934_220

Information

Type -
Description -
Location Contig934: 190646-192266
Sequence    

Annotation

kegg
ID bvg:104890722
description uncharacterized LOC104890722
nr
ID XP_010674599.1
description PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M5VIG0
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023969mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_220 0.0 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
2 Hb_000188_090 0.0057425921 - - JHL22C18.10 [Jatropha curcas]
3 Hb_010222_010 0.0090282064 - - -
4 Hb_001887_030 0.0199519803 - - -
5 Hb_044767_010 0.0229889334 - - -
6 Hb_066620_010 0.0258653407 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
7 Hb_012587_010 0.033554454 - - -
8 Hb_003985_020 0.0375027374 - - -
9 Hb_003017_010 0.040211516 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
10 Hb_002257_070 0.0411875881 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_056305_010 0.041528389 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_008891_020 0.041608264 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
13 Hb_003556_020 0.0566240585 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
14 Hb_002463_080 0.0598630307 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000574_020 0.0676163072 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_006275_030 0.0706765882 - - -
17 Hb_187661_010 0.0907600165 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
18 Hb_012194_010 0.0928113419 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_005741_010 0.1053628999 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
20 Hb_004458_050 0.1100881985 - - -

Gene co-expression network

sample Hb_000934_220 Hb_000934_220 Hb_000188_090 Hb_000188_090 Hb_000934_220--Hb_000188_090 Hb_010222_010 Hb_010222_010 Hb_000934_220--Hb_010222_010 Hb_001887_030 Hb_001887_030 Hb_000934_220--Hb_001887_030 Hb_044767_010 Hb_044767_010 Hb_000934_220--Hb_044767_010 Hb_066620_010 Hb_066620_010 Hb_000934_220--Hb_066620_010 Hb_012587_010 Hb_012587_010 Hb_000934_220--Hb_012587_010 Hb_000188_090--Hb_010222_010 Hb_000188_090--Hb_001887_030 Hb_000188_090--Hb_044767_010 Hb_000188_090--Hb_066620_010 Hb_000188_090--Hb_012587_010 Hb_010222_010--Hb_001887_030 Hb_010222_010--Hb_044767_010 Hb_010222_010--Hb_066620_010 Hb_010222_010--Hb_012587_010 Hb_001887_030--Hb_044767_010 Hb_001887_030--Hb_066620_010 Hb_001887_030--Hb_012587_010 Hb_003985_020 Hb_003985_020 Hb_001887_030--Hb_003985_020 Hb_003017_010 Hb_003017_010 Hb_001887_030--Hb_003017_010 Hb_044767_010--Hb_066620_010 Hb_044767_010--Hb_012587_010 Hb_044767_010--Hb_003985_020 Hb_044767_010--Hb_003017_010 Hb_002257_070 Hb_002257_070 Hb_044767_010--Hb_002257_070 Hb_066620_010--Hb_012587_010 Hb_066620_010--Hb_003985_020 Hb_066620_010--Hb_003017_010 Hb_066620_010--Hb_002257_070 Hb_012587_010--Hb_003985_020 Hb_012587_010--Hb_003017_010 Hb_012587_010--Hb_002257_070 Hb_056305_010 Hb_056305_010 Hb_012587_010--Hb_056305_010 Hb_008891_020 Hb_008891_020 Hb_012587_010--Hb_008891_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0189394 0 0 0 0 0.020142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis