Hb_000934_250

Information

Type -
Description -
Location Contig934: 224263-228161
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20980g
description POPTRDRAFT_559331; exostosin family protein
nr
ID XP_012066092.1
description PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
swissprot
ID Q3E7Q9
description Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2
trembl
ID A0A067LFZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25245 PE=4 SV=1
Gene Ontology
ID GO:0005768
description exostosin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62943: 221925-223333 , PASA_asmbl_62944: 224764-228071 , PASA_asmbl_62946: 224402-228071 , PASA_asmbl_62947: 224838-227903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_250 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
2 Hb_001318_250 0.0461437559 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
3 Hb_003126_090 0.0682814932 - - Rop1 [Hevea brasiliensis]
4 Hb_003581_150 0.0703837277 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
5 Hb_065525_020 0.0721862071 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
6 Hb_152784_010 0.0741110915 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
7 Hb_010042_010 0.0776089302 - - Urease accessory protein ureD, putative [Ricinus communis]
8 Hb_001016_030 0.0792927467 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_001124_090 0.0796287443 - - acyl carrier protein, putative [Ricinus communis]
10 Hb_000103_320 0.0798768569 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_000317_390 0.082093992 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
12 Hb_000201_120 0.0823061835 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
13 Hb_033594_110 0.0837250375 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000987_070 0.087447019 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
15 Hb_002830_020 0.0885130349 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_033594_150 0.0914170586 - - unknown [Lotus japonicus]
17 Hb_000638_250 0.0919314904 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_021596_090 0.0937409091 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
19 Hb_001047_240 0.0957601187 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
20 Hb_001140_370 0.0958714094 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_250 Hb_000934_250 Hb_001318_250 Hb_001318_250 Hb_000934_250--Hb_001318_250 Hb_003126_090 Hb_003126_090 Hb_000934_250--Hb_003126_090 Hb_003581_150 Hb_003581_150 Hb_000934_250--Hb_003581_150 Hb_065525_020 Hb_065525_020 Hb_000934_250--Hb_065525_020 Hb_152784_010 Hb_152784_010 Hb_000934_250--Hb_152784_010 Hb_010042_010 Hb_010042_010 Hb_000934_250--Hb_010042_010 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_001318_250--Hb_152784_010 Hb_000317_390 Hb_000317_390 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_033594_110 Hb_033594_110 Hb_003126_090--Hb_033594_110 Hb_003126_090--Hb_001016_030 Hb_003126_090--Hb_001318_250 Hb_003126_090--Hb_065525_020 Hb_002830_020 Hb_002830_020 Hb_003126_090--Hb_002830_020 Hb_000201_120 Hb_000201_120 Hb_003581_150--Hb_000201_120 Hb_003581_150--Hb_000103_320 Hb_003581_150--Hb_002830_020 Hb_010175_040 Hb_010175_040 Hb_003581_150--Hb_010175_040 Hb_129204_030 Hb_129204_030 Hb_003581_150--Hb_129204_030 Hb_009773_020 Hb_009773_020 Hb_065525_020--Hb_009773_020 Hb_002030_040 Hb_002030_040 Hb_065525_020--Hb_002030_040 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_065525_020--Hb_010042_010 Hb_001105_070 Hb_001105_070 Hb_065525_020--Hb_001105_070 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_152784_010--Hb_000317_390 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080 Hb_015807_040 Hb_015807_040 Hb_010042_010--Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_010042_010--Hb_000331_450 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4057 5.79825 15.0133 18.9876 14.8863 14.9833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.9501 29.7009 20.8941 8.51169 6.7552

CAGE analysis