Hb_000934_270

Information

Type -
Description -
Location Contig934: 231032-232696
Sequence    

Annotation

kegg
ID vvi:100267687
description pentatricopeptide repeat-containing protein At3g21470
nr
ID XP_011027384.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
swissprot
ID Q9LVF9
description Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
trembl
ID A0A067GVD0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008546mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_270 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
2 Hb_010172_050 0.0805374413 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
3 Hb_178968_110 0.0876297549 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
4 Hb_000022_250 0.0918081437 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
5 Hb_003266_130 0.0920796014 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_029584_130 0.0928482128 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
7 Hb_000007_150 0.0932668284 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
8 Hb_001085_170 0.0941588687 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
9 Hb_000179_210 0.0966360488 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
10 Hb_016901_010 0.0977416821 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_000479_130 0.0994284946 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
12 Hb_004306_060 0.0997145709 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
13 Hb_001975_160 0.0999485644 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000307_030 0.1009602958 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
15 Hb_003687_100 0.1016078803 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
16 Hb_000297_200 0.101945371 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
17 Hb_000173_230 0.1061289378 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
18 Hb_006501_040 0.1066621201 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
19 Hb_000063_140 0.1068750795 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
20 Hb_006816_140 0.107059846 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_270 Hb_000934_270 Hb_010172_050 Hb_010172_050 Hb_000934_270--Hb_010172_050 Hb_178968_110 Hb_178968_110 Hb_000934_270--Hb_178968_110 Hb_000022_250 Hb_000022_250 Hb_000934_270--Hb_000022_250 Hb_003266_130 Hb_003266_130 Hb_000934_270--Hb_003266_130 Hb_029584_130 Hb_029584_130 Hb_000934_270--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000934_270--Hb_000007_150 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_010172_050--Hb_003266_130 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_029584_130--Hb_001159_100 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_000427_050 Hb_000427_050 Hb_029584_130--Hb_000427_050 Hb_000019_130 Hb_000019_130 Hb_000007_150--Hb_000019_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000297_200 Hb_000007_150--Hb_000427_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66898 0.762029 0.375952 0.444916 1.17651 1.56694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.776125 1.74466 3.00229 0.634613 0.73298

CAGE analysis