Hb_000934_290

Information

Type -
Description -
Location Contig934: 278251-280958
Sequence    

Annotation

kegg
ID rcu:RCOM_0138900
description hypothetical protein
nr
ID XP_002526178.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L9J7
description Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1
trembl
ID B9SJK9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0138900 PE=4 SV=1
Gene Ontology
ID GO:0008643
description bidirectional sugar transporter sweet1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62952: 278223-280905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008140_060 0.0729957719 - - Cytochrome P450, putative [Theobroma cacao]
3 Hb_003788_010 0.0808764571 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
4 Hb_039496_010 0.0829446487 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_001158_080 0.0862700874 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
6 Hb_003787_060 0.090332263 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
7 Hb_094637_010 0.0937370851 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
8 Hb_002391_350 0.097254191 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
9 Hb_003807_020 0.1003891062 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
10 Hb_000335_050 0.102031272 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
11 Hb_002551_090 0.1020868898 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
12 Hb_003805_080 0.1063058711 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_000276_030 0.1075651939 - - dimethylaniline monooxygenase, putative [Ricinus communis]
14 Hb_000852_050 0.1090028842 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
15 Hb_009581_050 0.1090617625 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
16 Hb_000236_050 0.1120066392 - - phosphate transporter [Manihot esculenta]
17 Hb_184942_010 0.1144791013 - - STS14 protein precursor, putative [Ricinus communis]
18 Hb_000963_010 0.115873339 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
19 Hb_005211_090 0.1159309065 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
20 Hb_012807_140 0.1175420883 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]

Gene co-expression network

sample Hb_000934_290 Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_000934_290--Hb_008140_060 Hb_003788_010 Hb_003788_010 Hb_000934_290--Hb_003788_010 Hb_039496_010 Hb_039496_010 Hb_000934_290--Hb_039496_010 Hb_001158_080 Hb_001158_080 Hb_000934_290--Hb_001158_080 Hb_003787_060 Hb_003787_060 Hb_000934_290--Hb_003787_060 Hb_094637_010 Hb_094637_010 Hb_000934_290--Hb_094637_010 Hb_008140_060--Hb_094637_010 Hb_000844_100 Hb_000844_100 Hb_008140_060--Hb_000844_100 Hb_008140_060--Hb_001158_080 Hb_088916_010 Hb_088916_010 Hb_008140_060--Hb_088916_010 Hb_002551_090 Hb_002551_090 Hb_008140_060--Hb_002551_090 Hb_130967_010 Hb_130967_010 Hb_003788_010--Hb_130967_010 Hb_003788_010--Hb_039496_010 Hb_000335_050 Hb_000335_050 Hb_003788_010--Hb_000335_050 Hb_009581_050 Hb_009581_050 Hb_003788_010--Hb_009581_050 Hb_012807_060 Hb_012807_060 Hb_003788_010--Hb_012807_060 Hb_039496_010--Hb_003787_060 Hb_003805_080 Hb_003805_080 Hb_039496_010--Hb_003805_080 Hb_000963_010 Hb_000963_010 Hb_039496_010--Hb_000963_010 Hb_028008_030 Hb_028008_030 Hb_039496_010--Hb_028008_030 Hb_001158_080--Hb_002551_090 Hb_184942_010 Hb_184942_010 Hb_001158_080--Hb_184942_010 Hb_009642_010 Hb_009642_010 Hb_001158_080--Hb_009642_010 Hb_001158_080--Hb_003787_060 Hb_003787_060--Hb_003805_080 Hb_188923_010 Hb_188923_010 Hb_003787_060--Hb_188923_010 Hb_003787_060--Hb_000963_010 Hb_003734_120 Hb_003734_120 Hb_003787_060--Hb_003734_120 Hb_094637_010--Hb_009581_050 Hb_001638_110 Hb_001638_110 Hb_094637_010--Hb_001638_110 Hb_000000_060 Hb_000000_060 Hb_094637_010--Hb_000000_060 Hb_094637_010--Hb_039496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.416635 74.4402 16.0427 66.0521 0.250917 0.239435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.069857 0.0274777 0 159.14 20.6058

CAGE analysis