Hb_000935_030

Information

Type -
Description -
Location Contig935: 28822-33450
Sequence    

Annotation

kegg
ID rcu:RCOM_0859900
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID XP_002530610.1
description Squalene monooxygenase, putative [Ricinus communis]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SX91
description Squalene monooxygenase, putative OS=Ricinus communis GN=RCOM_0859900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62972: 27399-29015 , PASA_asmbl_62973: 29018-29478 , PASA_asmbl_62974: 32583-33449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_030 0.0 - - Squalene monooxygenase, putative [Ricinus communis]
2 Hb_000384_130 0.1420853324 - - uridylate kinase plant, putative [Ricinus communis]
3 Hb_011671_390 0.1547963581 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
4 Hb_000012_130 0.1716473826 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
5 Hb_015057_060 0.1747122475 - - -
6 Hb_000035_430 0.1766861664 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
7 Hb_003336_030 0.1774745496 - - transcription factor, putative [Ricinus communis]
8 Hb_001040_110 0.1785784431 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
9 Hb_001828_080 0.1788978544 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
10 Hb_004846_090 0.1797731404 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
11 Hb_000575_020 0.1801986439 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
12 Hb_005496_150 0.1833839959 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
13 Hb_028487_030 0.1838966414 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000735_130 0.1855324688 - - conserved hypothetical protein [Ricinus communis]
15 Hb_024714_050 0.1862908749 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
16 Hb_000367_100 0.1875138909 - - BnaA05g32070D [Brassica napus]
17 Hb_164926_020 0.1877511797 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
18 Hb_007432_030 0.1887431409 - - acyl-CoA thioesterase, putative [Ricinus communis]
19 Hb_000320_180 0.1888529174 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
20 Hb_001300_040 0.1901574129 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]

Gene co-expression network

sample Hb_000935_030 Hb_000935_030 Hb_000384_130 Hb_000384_130 Hb_000935_030--Hb_000384_130 Hb_011671_390 Hb_011671_390 Hb_000935_030--Hb_011671_390 Hb_000012_130 Hb_000012_130 Hb_000935_030--Hb_000012_130 Hb_015057_060 Hb_015057_060 Hb_000935_030--Hb_015057_060 Hb_000035_430 Hb_000035_430 Hb_000935_030--Hb_000035_430 Hb_003336_030 Hb_003336_030 Hb_000935_030--Hb_003336_030 Hb_000159_070 Hb_000159_070 Hb_000384_130--Hb_000159_070 Hb_000046_260 Hb_000046_260 Hb_000384_130--Hb_000046_260 Hb_000384_130--Hb_000035_430 Hb_000809_060 Hb_000809_060 Hb_000384_130--Hb_000809_060 Hb_076693_040 Hb_076693_040 Hb_000384_130--Hb_076693_040 Hb_000062_390 Hb_000062_390 Hb_000384_130--Hb_000062_390 Hb_004846_090 Hb_004846_090 Hb_011671_390--Hb_004846_090 Hb_028487_030 Hb_028487_030 Hb_011671_390--Hb_028487_030 Hb_001616_030 Hb_001616_030 Hb_011671_390--Hb_001616_030 Hb_028486_030 Hb_028486_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_024714_060 Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_001439_170 Hb_001439_170 Hb_000012_130--Hb_001439_170 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030 Hb_005433_040 Hb_005433_040 Hb_015057_060--Hb_005433_040 Hb_000046_100 Hb_000046_100 Hb_015057_060--Hb_000046_100 Hb_035273_030 Hb_035273_030 Hb_015057_060--Hb_035273_030 Hb_007432_030 Hb_007432_030 Hb_015057_060--Hb_007432_030 Hb_019516_080 Hb_019516_080 Hb_015057_060--Hb_019516_080 Hb_007924_020 Hb_007924_020 Hb_015057_060--Hb_007924_020 Hb_000191_020 Hb_000191_020 Hb_000035_430--Hb_000191_020 Hb_007140_020 Hb_007140_020 Hb_000035_430--Hb_007140_020 Hb_001687_040 Hb_001687_040 Hb_000035_430--Hb_001687_040 Hb_001604_030 Hb_001604_030 Hb_000035_430--Hb_001604_030 Hb_000027_150 Hb_000027_150 Hb_000035_430--Hb_000027_150 Hb_000035_430--Hb_000012_130 Hb_138585_050 Hb_138585_050 Hb_003336_030--Hb_138585_050 Hb_000320_180 Hb_000320_180 Hb_003336_030--Hb_000320_180 Hb_024714_050 Hb_024714_050 Hb_003336_030--Hb_024714_050 Hb_000210_220 Hb_000210_220 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_000169_140 Hb_000169_140 Hb_003336_030--Hb_000169_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5801 0.757175 10.8272 5.50468 2.95998 2.57101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2245 27.2441 17.7077 1.2482 8.92112

CAGE analysis