Hb_000935_050

Information

Type -
Description -
Location Contig935: 38877-41039
Sequence    

Annotation

kegg
ID pmum:103336145
description pentatricopeptide repeat-containing protein At3g49710
nr
ID XP_012079465.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
swissprot
ID Q9M2Y7
description Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
trembl
ID A0A067K7M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12583 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g49710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
2 Hb_119600_040 0.0593356387 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
3 Hb_007075_050 0.0612841191 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000019_130 0.0699041734 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
5 Hb_027472_170 0.0699043897 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
6 Hb_000297_200 0.0823496575 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
7 Hb_007747_200 0.0852894205 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
8 Hb_000457_150 0.0874601826 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
9 Hb_006846_110 0.0877782418 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
10 Hb_000307_030 0.0922082609 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
11 Hb_000574_350 0.095885344 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
12 Hb_000635_220 0.0984208403 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
13 Hb_003687_100 0.1007189705 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
14 Hb_005686_030 0.1021802188 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
15 Hb_000007_150 0.1032097084 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
16 Hb_000997_400 0.1035057501 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
17 Hb_000019_060 0.105021949 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
18 Hb_005147_090 0.1059162334 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
19 Hb_008453_090 0.1060570696 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
20 Hb_000317_280 0.1079097806 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]

Gene co-expression network

sample Hb_000935_050 Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_007075_050 Hb_007075_050 Hb_000935_050--Hb_007075_050 Hb_000019_130 Hb_000019_130 Hb_000935_050--Hb_000019_130 Hb_027472_170 Hb_027472_170 Hb_000935_050--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_007747_200 Hb_007747_200 Hb_000935_050--Hb_007747_200 Hb_119600_040--Hb_007075_050 Hb_005686_030 Hb_005686_030 Hb_119600_040--Hb_005686_030 Hb_119600_040--Hb_027472_170 Hb_000236_140 Hb_000236_140 Hb_119600_040--Hb_000236_140 Hb_119600_040--Hb_000297_200 Hb_007075_050--Hb_000019_130 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100 Hb_000019_130--Hb_027472_170 Hb_000019_130--Hb_007747_200 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_027472_170--Hb_005686_030 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000297_200--Hb_000007_150 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_000317_280 Hb_000317_280 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93663 2.49532 0.525164 0.602151 2.17742 2.82052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11111 4.18539 6.43655 1.83229 0.724359

CAGE analysis