Hb_000935_060

Information

Type -
Description -
Location Contig935: 50345-52096
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14640g
description POPTRDRAFT_803014; 1-aminocyclopropane-1-carboxylic acid synthase family protein
nr
ID XP_012079466.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
swissprot
ID Q9T065
description 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1
trembl
ID B9HFU1
description 1-aminocyclopropane-1-carboxylic acid synthase family protein OS=Populus trichocarpa GN=POPTR_0007s14640g PE=3 SV=1
Gene Ontology
ID GO:0003824
description 1-aminocyclopropane-1-carboxylate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_060 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
2 Hb_004102_150 0.0129948571 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
3 Hb_000926_240 0.059794054 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
4 Hb_000917_070 0.0699573011 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005144_140 0.0733289169 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010068_010 0.0813939177 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
7 Hb_160479_010 0.0823891964 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_073870_010 0.0901410492 - - hypothetical protein RCOM_0725510 [Ricinus communis]
9 Hb_001369_510 0.0905422884 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
10 Hb_007138_010 0.0932503611 - - PREDICTED: putative laccase-9 [Jatropha curcas]
11 Hb_100953_010 0.0938266339 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
12 Hb_005348_020 0.0983306894 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033691_010 0.0993175405 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
14 Hb_001404_060 0.1115294 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_000740_140 0.1164389575 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
16 Hb_034858_010 0.1189843172 - - -
17 Hb_004317_020 0.1228785763 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
18 Hb_000320_240 0.1307154164 - - multicopper oxidase, putative [Ricinus communis]
19 Hb_005389_030 0.1320579689 - - hypothetical protein VITISV_023348 [Vitis vinifera]
20 Hb_000566_060 0.1364381195 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000935_060 Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_000935_060--Hb_004102_150 Hb_000926_240 Hb_000926_240 Hb_000935_060--Hb_000926_240 Hb_000917_070 Hb_000917_070 Hb_000935_060--Hb_000917_070 Hb_005144_140 Hb_005144_140 Hb_000935_060--Hb_005144_140 Hb_010068_010 Hb_010068_010 Hb_000935_060--Hb_010068_010 Hb_160479_010 Hb_160479_010 Hb_000935_060--Hb_160479_010 Hb_004102_150--Hb_000917_070 Hb_004102_150--Hb_000926_240 Hb_004102_150--Hb_005144_140 Hb_004102_150--Hb_010068_010 Hb_005348_020 Hb_005348_020 Hb_004102_150--Hb_005348_020 Hb_000926_240--Hb_010068_010 Hb_000926_240--Hb_160479_010 Hb_004317_020 Hb_004317_020 Hb_000926_240--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000926_240--Hb_034858_010 Hb_000917_070--Hb_005144_140 Hb_000917_070--Hb_005348_020 Hb_006275_040 Hb_006275_040 Hb_000917_070--Hb_006275_040 Hb_000740_140 Hb_000740_140 Hb_000917_070--Hb_000740_140 Hb_005144_140--Hb_006275_040 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005144_140--Hb_005348_020 Hb_010068_010--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_004317_020 Hb_051900_020 Hb_051900_020 Hb_010068_010--Hb_051900_020 Hb_000566_060 Hb_000566_060 Hb_010068_010--Hb_000566_060 Hb_160479_010--Hb_033691_010 Hb_160479_010--Hb_051900_020 Hb_160479_010--Hb_004317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0116818 0.0790053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0106502 0

CAGE analysis