Hb_000935_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig935: 78760-80127
Sequence    

Annotation

kegg
ID rcu:RCOM_0859200
description r2r3-myb transcription factor, putative
nr
ID XP_002530600.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9SX81
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0859200 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_070 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_001021_140 0.1163110939 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_000077_460 0.1310766414 - - -
4 Hb_004341_010 0.137906114 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
5 Hb_003556_060 0.1409031222 - - -
6 Hb_001283_010 0.1409224402 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
7 Hb_028207_030 0.1424532553 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
8 Hb_031954_010 0.1452151411 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002762_070 0.1484977575 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
10 Hb_031862_090 0.1497108751 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
11 Hb_000703_320 0.1505073828 - - receptor-kinase, putative [Ricinus communis]
12 Hb_183209_010 0.1514290914 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
13 Hb_000045_180 0.1519208318 - - aquaporin PIP1 [Hevea brasiliensis]
14 Hb_004837_170 0.1570056807 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
15 Hb_081448_010 0.1573945124 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
16 Hb_017866_020 0.1591659795 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
17 Hb_000077_470 0.1613557195 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
18 Hb_002003_020 0.161990733 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
19 Hb_027445_080 0.1628268441 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
20 Hb_001227_020 0.1631234963 - - -

Gene co-expression network

sample Hb_000935_070 Hb_000935_070 Hb_001021_140 Hb_001021_140 Hb_000935_070--Hb_001021_140 Hb_000077_460 Hb_000077_460 Hb_000935_070--Hb_000077_460 Hb_004341_010 Hb_004341_010 Hb_000935_070--Hb_004341_010 Hb_003556_060 Hb_003556_060 Hb_000935_070--Hb_003556_060 Hb_001283_010 Hb_001283_010 Hb_000935_070--Hb_001283_010 Hb_028207_030 Hb_028207_030 Hb_000935_070--Hb_028207_030 Hb_081448_010 Hb_081448_010 Hb_001021_140--Hb_081448_010 Hb_031862_090 Hb_031862_090 Hb_001021_140--Hb_031862_090 Hb_005081_080 Hb_005081_080 Hb_001021_140--Hb_005081_080 Hb_000703_320 Hb_000703_320 Hb_001021_140--Hb_000703_320 Hb_000077_470 Hb_000077_470 Hb_001021_140--Hb_000077_470 Hb_001021_140--Hb_004341_010 Hb_000077_460--Hb_028207_030 Hb_017866_020 Hb_017866_020 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_000077_460--Hb_001283_010 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_002003_020 Hb_002003_020 Hb_000077_460--Hb_002003_020 Hb_031954_010 Hb_031954_010 Hb_004341_010--Hb_031954_010 Hb_004837_170 Hb_004837_170 Hb_004341_010--Hb_004837_170 Hb_002762_070 Hb_002762_070 Hb_004341_010--Hb_002762_070 Hb_004341_010--Hb_000077_460 Hb_004341_010--Hb_028207_030 Hb_004341_010--Hb_001283_010 Hb_126077_020 Hb_126077_020 Hb_003556_060--Hb_126077_020 Hb_034342_010 Hb_034342_010 Hb_003556_060--Hb_034342_010 Hb_022998_010 Hb_022998_010 Hb_003556_060--Hb_022998_010 Hb_001424_080 Hb_001424_080 Hb_003556_060--Hb_001424_080 Hb_003556_060--Hb_017866_020 Hb_003556_060--Hb_000077_460 Hb_004136_050 Hb_004136_050 Hb_001283_010--Hb_004136_050 Hb_001283_010--Hb_031954_010 Hb_001283_010--Hb_017866_020 Hb_001283_010--Hb_002003_020 Hb_028207_030--Hb_002762_070 Hb_028207_030--Hb_031954_010 Hb_028207_030--Hb_031862_090 Hb_027445_080 Hb_027445_080 Hb_028207_030--Hb_027445_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.997178 0.0277923 0.416978 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0413539 0 0 0.84726 0

CAGE analysis