Hb_000935_080

Information

Type -
Description -
Location Contig935: 91591-100070
Sequence    

Annotation

kegg
ID rcu:RCOM_0858990
description branched-chain amino acid aminotransferase, putative (EC:2.6.1.42)
nr
ID XP_012079468.1
description PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9FYA6
description Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1
trembl
ID A0A067KIN6
description Branched-chain-amino-acid aminotransferase OS=Jatropha curcas GN=JCGZ_12586 PE=3 SV=1
Gene Ontology
ID GO:0004084
description branched-chain-amino-acid aminotransferase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62981: 91573-100020 , PASA_asmbl_62982: 91573-95535 , PASA_asmbl_62983: 95612-100018 , PASA_asmbl_62984: 93575-94083 , PASA_asmbl_62985: 95187-100020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_080 0.0 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000088_240 0.1057749897 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_000941_060 0.128296198 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
4 Hb_006951_030 0.1314333898 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
5 Hb_006634_100 0.1377469098 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002942_120 0.1442225615 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
7 Hb_004163_030 0.1443628868 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
8 Hb_005527_060 0.1493627783 - - malic enzyme, putative [Ricinus communis]
9 Hb_000406_030 0.1539550406 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
10 Hb_038044_010 0.1548863567 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_003398_040 0.1576967711 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
12 Hb_001377_530 0.1607272891 - - NC domain-containing family protein [Populus trichocarpa]
13 Hb_114310_100 0.1617768335 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
14 Hb_007426_220 0.1637574621 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
15 Hb_004155_020 0.1663879719 transcription factor TF Family: MYB myb, putative [Ricinus communis]
16 Hb_029510_130 0.1667965723 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
17 Hb_003050_360 0.1668390466 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
18 Hb_002662_040 0.1669199515 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
19 Hb_000526_010 0.1690762616 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
20 Hb_001123_310 0.1692701665 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_000935_080 Hb_000935_080 Hb_000088_240 Hb_000088_240 Hb_000935_080--Hb_000088_240 Hb_000941_060 Hb_000941_060 Hb_000935_080--Hb_000941_060 Hb_006951_030 Hb_006951_030 Hb_000935_080--Hb_006951_030 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_000120_300 Hb_000120_300 Hb_000088_240--Hb_000120_300 Hb_001123_310 Hb_001123_310 Hb_000088_240--Hb_001123_310 Hb_001377_530 Hb_001377_530 Hb_000088_240--Hb_001377_530 Hb_001117_080 Hb_001117_080 Hb_000088_240--Hb_001117_080 Hb_005527_060 Hb_005527_060 Hb_000088_240--Hb_005527_060 Hb_003398_040 Hb_003398_040 Hb_000941_060--Hb_003398_040 Hb_000941_060--Hb_000088_240 Hb_000941_060--Hb_002942_120 Hb_000009_420 Hb_000009_420 Hb_000941_060--Hb_000009_420 Hb_021346_050 Hb_021346_050 Hb_000941_060--Hb_021346_050 Hb_003894_030 Hb_003894_030 Hb_006951_030--Hb_003894_030 Hb_006951_030--Hb_000088_240 Hb_004155_020 Hb_004155_020 Hb_006951_030--Hb_004155_020 Hb_000406_030 Hb_000406_030 Hb_006951_030--Hb_000406_030 Hb_003271_040 Hb_003271_040 Hb_006951_030--Hb_003271_040 Hb_006634_100--Hb_004163_030 Hb_003050_360 Hb_003050_360 Hb_006634_100--Hb_003050_360 Hb_005622_020 Hb_005622_020 Hb_006634_100--Hb_005622_020 Hb_002662_040 Hb_002662_040 Hb_006634_100--Hb_002662_040 Hb_006634_100--Hb_006951_030 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_002942_120--Hb_005527_060 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_000526_010 Hb_000526_010 Hb_004163_030--Hb_000526_010 Hb_001141_050 Hb_001141_050 Hb_004163_030--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_004163_030--Hb_000230_190 Hb_004163_030--Hb_004155_020 Hb_004163_030--Hb_002662_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62853 13.6498 101.187 35.9453 3.36661 2.89647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10623 7.61796 16.9861 22.6923 27.2667

CAGE analysis