Hb_000935_090

Information

Type -
Description -
Location Contig935: 101922-108182
Sequence    

Annotation

kegg
ID rcu:RCOM_0858960
description Filamin-A-interacting protein, putative
nr
ID XP_012079470.1
description PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
swissprot
ID Q9FLH0
description Protein CROWDED NUCLEI 4 OS=Arabidopsis thaliana GN=CRWN4 PE=1 SV=2
trembl
ID A0A067K7A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12587 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62986: 101941-104862 , PASA_asmbl_62987: 101941-104862 , PASA_asmbl_62988: 104870-108231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000935_090 0.0 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
2 Hb_001178_150 0.0529237852 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
3 Hb_001493_040 0.0602125326 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
4 Hb_001417_050 0.0646955404 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
5 Hb_000796_190 0.065854386 - - hypothetical protein F383_31148 [Gossypium arboreum]
6 Hb_000025_650 0.0664850072 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
7 Hb_004429_160 0.0666117861 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
8 Hb_001473_090 0.068947483 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
9 Hb_000160_290 0.0705136882 - - unnamed protein product [Vitis vinifera]
10 Hb_003029_130 0.0713419349 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_010315_090 0.0723207586 - - suppressor of ty, putative [Ricinus communis]
12 Hb_000879_160 0.0725815559 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
13 Hb_028872_120 0.0758547327 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
14 Hb_000347_570 0.0791712289 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
15 Hb_010925_020 0.0808011027 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
16 Hb_006787_060 0.0817372021 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
17 Hb_002422_050 0.0820768356 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
18 Hb_000329_130 0.082608371 - - beta-tubulin cofactor d, putative [Ricinus communis]
19 Hb_002174_020 0.0831738469 - - ring finger protein, putative [Ricinus communis]
20 Hb_002392_030 0.083408938 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]

Gene co-expression network

sample Hb_000935_090 Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_001493_040--Hb_001417_050 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_001493_040--Hb_010315_090 Hb_000160_290 Hb_000160_290 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050 Hb_001417_050--Hb_000160_290 Hb_001417_050--Hb_010315_090 Hb_001417_050--Hb_002422_050 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_001417_050--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_000025_650--Hb_000347_570 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_000025_650--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_004429_160--Hb_000191_130 Hb_003040_020 Hb_003040_020 Hb_004429_160--Hb_003040_020 Hb_000032_010 Hb_000032_010 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.6552 38.2852 21.8145 21.7343 45.9225 51.7142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4216 9.23473 12.1066 21.3126 28.1215

CAGE analysis