Hb_000936_030

Information

Type -
Description -
Location Contig936: 47813-52391
Sequence    

Annotation

kegg
ID rcu:RCOM_0615680
description hypothetical protein
nr
ID XP_002528420.1
description hypothetical protein RCOM_0615680 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SR01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0615680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62997: 47700-52459
cDNA
(Sanger)
(ID:Location)		 020_E01.ab1: 47700-52058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000936_030 0.0 - - hypothetical protein RCOM_0615680 [Ricinus communis]
2 Hb_001755_040 0.1099466563 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
3 Hb_004129_060 0.1120112243 - - triacylglycerol lipase, putative [Ricinus communis]
4 Hb_010705_040 0.113479546 - - PREDICTED: kinesin-4 [Jatropha curcas]
5 Hb_002205_180 0.1185321185 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
6 Hb_002232_310 0.1257942045 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
7 Hb_004102_090 0.1262440155 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
8 Hb_000069_510 0.1281428425 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
9 Hb_004635_020 0.1293214747 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
10 Hb_002811_210 0.1331265769 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
11 Hb_001168_030 0.1342137256 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
12 Hb_014497_070 0.1369585827 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
13 Hb_101133_050 0.1381751945 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
14 Hb_000441_210 0.1397576857 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
15 Hb_000656_320 0.1397949628 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
16 Hb_000960_120 0.1398369459 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
17 Hb_004963_020 0.1405159913 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_000316_070 0.1420596082 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
19 Hb_012150_040 0.1457958219 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004109_100 0.1479273952 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000936_030 Hb_000936_030 Hb_001755_040 Hb_001755_040 Hb_000936_030--Hb_001755_040 Hb_004129_060 Hb_004129_060 Hb_000936_030--Hb_004129_060 Hb_010705_040 Hb_010705_040 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_003935_090 Hb_003935_090 Hb_001755_040--Hb_003935_090 Hb_001755_040--Hb_010705_040 Hb_001862_050 Hb_001862_050 Hb_004129_060--Hb_001862_050 Hb_003020_190 Hb_003020_190 Hb_004129_060--Hb_003020_190 Hb_000190_220 Hb_000190_220 Hb_004129_060--Hb_000190_220 Hb_004129_060--Hb_001755_040 Hb_003109_010 Hb_003109_010 Hb_004129_060--Hb_003109_010 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_000441_210 Hb_000441_210 Hb_010705_040--Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_010705_040--Hb_004963_020 Hb_010705_040--Hb_004102_090 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_002205_180--Hb_004102_090 Hb_000189_350 Hb_000189_350 Hb_002205_180--Hb_000189_350 Hb_002205_180--Hb_000441_210 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060 Hb_002232_310--Hb_003935_090 Hb_002232_310--Hb_010705_040 Hb_002232_310--Hb_003109_010 Hb_002232_310--Hb_004109_100 Hb_002232_310--Hb_007574_020 Hb_004102_090--Hb_004963_020 Hb_004102_090--Hb_000441_210 Hb_000316_070 Hb_000316_070 Hb_004102_090--Hb_000316_070 Hb_004102_090--Hb_006520_030 Hb_004102_090--Hb_000189_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157573 0.4682 12.4849 5.81437 0.448164 0.166325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16042 0.210274 0 0.372468 1.02913

CAGE analysis