Hb_000938_050

Information

Type -
Description -
Location Contig938: 158436-161913
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020036mg
description hypothetical protein
nr
ID KDP45391.1
description hypothetical protein JCGZ_09640 [Jatropha curcas]
swissprot
ID F4KHA8
description WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=3 SV=1
trembl
ID A0A067LAA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09640 PE=4 SV=1
Gene Ontology
ID GO:0016020
description wat1-related protein at5g40230 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000938_050 0.0 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
2 Hb_005018_050 0.06239392 - - PREDICTED: licodione synthase-like [Jatropha curcas]
3 Hb_003407_050 0.0634074685 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_031194_030 0.0641901371 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
5 Hb_003120_090 0.0659833255 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
6 Hb_002704_090 0.0682089529 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002835_420 0.06892142 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
8 Hb_007595_030 0.0740044237 - - psbA gene product (chloroplast) [Silene noctiflora]
9 Hb_010053_060 0.0744569682 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_088080_010 0.0757619793 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
11 Hb_126973_010 0.0760762536 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
12 Hb_010053_050 0.0765468723 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
13 Hb_154980_010 0.0771389261 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
14 Hb_004161_040 0.0773681012 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
15 Hb_007645_010 0.0807916114 - - NdhE, partial (chloroplast) [Podocalyx loranthoides]
16 Hb_002093_010 0.0814407995 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
17 Hb_106850_010 0.0820528041 - - photosystem II protein D2 [Lactuca sativa]
18 Hb_007933_010 0.0861057437 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_006302_050 0.0881834754 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
20 Hb_007645_050 0.0884988076 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_000938_050 Hb_000938_050 Hb_005018_050 Hb_005018_050 Hb_000938_050--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_000938_050--Hb_003407_050 Hb_031194_030 Hb_031194_030 Hb_000938_050--Hb_031194_030 Hb_003120_090 Hb_003120_090 Hb_000938_050--Hb_003120_090 Hb_002704_090 Hb_002704_090 Hb_000938_050--Hb_002704_090 Hb_002835_420 Hb_002835_420 Hb_000938_050--Hb_002835_420 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_003120_090 Hb_005018_050--Hb_031194_030 Hb_005018_050--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_005018_050--Hb_007933_010 Hb_088080_010 Hb_088080_010 Hb_005018_050--Hb_088080_010 Hb_003407_050--Hb_003120_090 Hb_003407_050--Hb_031194_030 Hb_003407_050--Hb_002704_090 Hb_003407_050--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_003407_050--Hb_007595_030 Hb_031194_030--Hb_088080_010 Hb_031194_030--Hb_007595_030 Hb_031194_030--Hb_003120_090 Hb_031194_030--Hb_002704_090 Hb_003120_090--Hb_002704_090 Hb_003120_090--Hb_007933_010 Hb_000853_280 Hb_000853_280 Hb_003120_090--Hb_000853_280 Hb_002093_010 Hb_002093_010 Hb_002704_090--Hb_002093_010 Hb_000627_060 Hb_000627_060 Hb_002704_090--Hb_000627_060 Hb_002704_090--Hb_007933_010 Hb_154980_010 Hb_154980_010 Hb_002835_420--Hb_154980_010 Hb_106850_010 Hb_106850_010 Hb_002835_420--Hb_106850_010 Hb_104509_010 Hb_104509_010 Hb_002835_420--Hb_104509_010 Hb_002835_420--Hb_031194_030 Hb_126973_010 Hb_126973_010 Hb_002835_420--Hb_126973_010 Hb_006302_050 Hb_006302_050 Hb_002835_420--Hb_006302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.141846 0.0460107 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0272211 3.8521

CAGE analysis