Hb_000940_020

Information

Type -
Description -
Location Contig940: 9062-9454
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17500g
description POPTRDRAFT_713198; hypothetical protein
nr
ID XP_002305484.1
description hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H147
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63132: 9034-9981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_020 0.0 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
2 Hb_000345_190 0.1241991753 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
3 Hb_002701_140 0.1246935182 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
4 Hb_001810_010 0.1287743626 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
5 Hb_004586_380 0.1289787968 - - purine transporter, putative [Ricinus communis]
6 Hb_029866_140 0.134377943 - - PREDICTED: hevamine-A [Jatropha curcas]
7 Hb_006351_080 0.1353898938 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
8 Hb_001376_020 0.1355569088 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
9 Hb_011054_030 0.1393503378 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
10 Hb_000035_360 0.1406908422 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
11 Hb_000277_020 0.1421019709 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
12 Hb_000532_060 0.1430971005 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_005054_300 0.1437023842 - - aquaporin [Hevea brasiliensis]
14 Hb_008707_020 0.1455691474 - - ATP binding protein, putative [Ricinus communis]
15 Hb_005396_100 0.146216536 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000233_060 0.1480830906 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
17 Hb_017417_030 0.1503383121 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
18 Hb_003847_140 0.1514926175 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
19 Hb_001013_010 0.1555718152 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001274_040 0.1561923005 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]

Gene co-expression network

sample Hb_000940_020 Hb_000940_020 Hb_000345_190 Hb_000345_190 Hb_000940_020--Hb_000345_190 Hb_002701_140 Hb_002701_140 Hb_000940_020--Hb_002701_140 Hb_001810_010 Hb_001810_010 Hb_000940_020--Hb_001810_010 Hb_004586_380 Hb_004586_380 Hb_000940_020--Hb_004586_380 Hb_029866_140 Hb_029866_140 Hb_000940_020--Hb_029866_140 Hb_006351_080 Hb_006351_080 Hb_000940_020--Hb_006351_080 Hb_000532_060 Hb_000532_060 Hb_000345_190--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000345_190--Hb_046117_050 Hb_000170_230 Hb_000170_230 Hb_000345_190--Hb_000170_230 Hb_135811_020 Hb_135811_020 Hb_000345_190--Hb_135811_020 Hb_106969_010 Hb_106969_010 Hb_000345_190--Hb_106969_010 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_000277_020 Hb_000277_020 Hb_002701_140--Hb_000277_020 Hb_000825_040 Hb_000825_040 Hb_002701_140--Hb_000825_040 Hb_003847_140 Hb_003847_140 Hb_002701_140--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_002701_140--Hb_000656_360 Hb_012268_010 Hb_012268_010 Hb_001810_010--Hb_012268_010 Hb_002217_440 Hb_002217_440 Hb_001810_010--Hb_002217_440 Hb_001810_010--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_001810_010--Hb_001363_010 Hb_001810_010--Hb_000345_190 Hb_004586_380--Hb_006351_080 Hb_176149_010 Hb_176149_010 Hb_004586_380--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_004586_380--Hb_000128_010 Hb_004098_010 Hb_004098_010 Hb_004586_380--Hb_004098_010 Hb_004586_380--Hb_000656_360 Hb_119441_010 Hb_119441_010 Hb_004586_380--Hb_119441_010 Hb_029866_140--Hb_000656_360 Hb_001376_020 Hb_001376_020 Hb_029866_140--Hb_001376_020 Hb_029866_140--Hb_003847_140 Hb_008707_020 Hb_008707_020 Hb_029866_140--Hb_008707_020 Hb_029866_140--Hb_176149_010 Hb_011054_030 Hb_011054_030 Hb_029866_140--Hb_011054_030 Hb_006351_080--Hb_176149_010 Hb_006351_080--Hb_000128_010 Hb_001331_050 Hb_001331_050 Hb_006351_080--Hb_001331_050 Hb_006351_080--Hb_119441_010 Hb_045810_010 Hb_045810_010 Hb_006351_080--Hb_045810_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51569 1171.22 19.8816 88.0457 8.06738 28.0348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.031 0.323938 0 260.343 20.655

CAGE analysis