Hb_000940_040

Information

Type -
Description -
Location Contig940: 33332-37654
Sequence    

Annotation

kegg
ID rcu:RCOM_0660610
description Protein FAM50A, putative
nr
ID XP_012084377.1
description PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
swissprot
ID Q8H110
description Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1
trembl
ID A0A067K6Y6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19589 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein xap5 circadian timekeeper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63135: 33329-37653 , PASA_asmbl_63136: 35049-35176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_040 0.0 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
2 Hb_007441_070 0.0652059657 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
3 Hb_019871_020 0.0881145314 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
4 Hb_011644_020 0.1029187907 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
5 Hb_004656_060 0.1091208504 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
6 Hb_000270_140 0.1091209573 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
7 Hb_000608_340 0.1092114597 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
8 Hb_000134_360 0.1095546715 - - PREDICTED: protein gar2 [Jatropha curcas]
9 Hb_007111_040 0.110453212 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
10 Hb_001623_580 0.1104577648 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
11 Hb_000261_520 0.1107462477 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
12 Hb_004567_100 0.111862321 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
13 Hb_000003_790 0.1128420378 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
14 Hb_007534_040 0.1130672522 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
15 Hb_008528_010 0.1141995284 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
16 Hb_001582_030 0.1161138791 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
17 Hb_000392_280 0.1162774764 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
18 Hb_000849_100 0.1171799285 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
19 Hb_000906_060 0.1180584323 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
20 Hb_005228_120 0.1181766806 - - phospholipase d beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_000940_040 Hb_000940_040 Hb_007441_070 Hb_007441_070 Hb_000940_040--Hb_007441_070 Hb_019871_020 Hb_019871_020 Hb_000940_040--Hb_019871_020 Hb_011644_020 Hb_011644_020 Hb_000940_040--Hb_011644_020 Hb_004656_060 Hb_004656_060 Hb_000940_040--Hb_004656_060 Hb_000270_140 Hb_000270_140 Hb_000940_040--Hb_000270_140 Hb_000608_340 Hb_000608_340 Hb_000940_040--Hb_000608_340 Hb_007441_070--Hb_011644_020 Hb_007441_070--Hb_019871_020 Hb_001582_030 Hb_001582_030 Hb_007441_070--Hb_001582_030 Hb_001357_190 Hb_001357_190 Hb_007441_070--Hb_001357_190 Hb_000152_890 Hb_000152_890 Hb_007441_070--Hb_000152_890 Hb_019871_020--Hb_000608_340 Hb_019871_020--Hb_001582_030 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_004531_090 Hb_004531_090 Hb_019871_020--Hb_004531_090 Hb_000185_090 Hb_000185_090 Hb_019871_020--Hb_000185_090 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_000684_180 Hb_000684_180 Hb_011644_020--Hb_000684_180 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_001195_030 Hb_001195_030 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_004701_030 Hb_004701_030 Hb_004656_060--Hb_004701_030 Hb_000422_140 Hb_000422_140 Hb_004656_060--Hb_000422_140 Hb_005895_040 Hb_005895_040 Hb_004656_060--Hb_005895_040 Hb_023001_020 Hb_023001_020 Hb_004656_060--Hb_023001_020 Hb_000640_220 Hb_000640_220 Hb_004656_060--Hb_000640_220 Hb_002587_020 Hb_002587_020 Hb_004656_060--Hb_002587_020 Hb_000906_060 Hb_000906_060 Hb_000270_140--Hb_000906_060 Hb_017711_020 Hb_017711_020 Hb_000270_140--Hb_017711_020 Hb_005214_160 Hb_005214_160 Hb_000270_140--Hb_005214_160 Hb_003097_190 Hb_003097_190 Hb_000270_140--Hb_003097_190 Hb_000270_140--Hb_000422_140 Hb_004567_100 Hb_004567_100 Hb_000270_140--Hb_004567_100 Hb_000779_040 Hb_000779_040 Hb_000608_340--Hb_000779_040 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.212 37.3977 23.5812 22.7944 235.043 158.764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.5737 42.9843 44.4449 31.583 25.1885

CAGE analysis