Hb_000940_160

Information

Type -
Description -
Location Contig940: 255127-257234
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN76807.1
description hypothetical protein VITISV_017596 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BF68
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017596 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63148: 228970-255181 , PASA_asmbl_63149: 255990-261104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_160 0.0 - - hypothetical protein VITISV_017596 [Vitis vinifera]
2 Hb_011791_020 0.1250858625 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
3 Hb_000117_070 0.1315710928 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
4 Hb_002942_110 0.1385561236 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
5 Hb_143986_010 0.1404778848 - - PREDICTED: beta-galactosidase [Jatropha curcas]
6 Hb_020178_050 0.144651228 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
7 Hb_120470_010 0.1465120875 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_004032_040 0.1493710445 - - unknown [Medicago truncatula]
9 Hb_003060_090 0.1509220408 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
10 Hb_001646_010 0.1526494828 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
11 Hb_003604_040 0.1528375352 - - Serine/threonine-protein kinase sepA [Morus notabilis]
12 Hb_000448_060 0.1545340154 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
13 Hb_000123_350 0.154646932 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
14 Hb_001369_770 0.1559187378 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
15 Hb_000896_060 0.1562670302 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_011861_080 0.1573733773 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
17 Hb_000574_420 0.1597271736 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
18 Hb_065500_030 0.1598240489 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
19 Hb_011716_110 0.1606851414 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
20 Hb_000189_100 0.1619523736 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]

Gene co-expression network

sample Hb_000940_160 Hb_000940_160 Hb_011791_020 Hb_011791_020 Hb_000940_160--Hb_011791_020 Hb_000117_070 Hb_000117_070 Hb_000940_160--Hb_000117_070 Hb_002942_110 Hb_002942_110 Hb_000940_160--Hb_002942_110 Hb_143986_010 Hb_143986_010 Hb_000940_160--Hb_143986_010 Hb_020178_050 Hb_020178_050 Hb_000940_160--Hb_020178_050 Hb_120470_010 Hb_120470_010 Hb_000940_160--Hb_120470_010 Hb_011791_020--Hb_143986_010 Hb_011791_020--Hb_120470_010 Hb_000526_060 Hb_000526_060 Hb_011791_020--Hb_000526_060 Hb_000123_350 Hb_000123_350 Hb_011791_020--Hb_000123_350 Hb_011791_020--Hb_000117_070 Hb_004032_040 Hb_004032_040 Hb_011791_020--Hb_004032_040 Hb_000896_060 Hb_000896_060 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_000526_060 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_120470_010 Hb_000703_130 Hb_000703_130 Hb_000117_070--Hb_000703_130 Hb_004195_120 Hb_004195_120 Hb_002942_110--Hb_004195_120 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_008948_160 Hb_008948_160 Hb_143986_010--Hb_008948_160 Hb_143986_010--Hb_120470_010 Hb_000327_080 Hb_000327_080 Hb_143986_010--Hb_000327_080 Hb_000105_020 Hb_000105_020 Hb_143986_010--Hb_000105_020 Hb_143986_010--Hb_000117_070 Hb_020178_050--Hb_001369_770 Hb_000448_060 Hb_000448_060 Hb_020178_050--Hb_000448_060 Hb_020178_050--Hb_004324_060 Hb_020178_050--Hb_004195_120 Hb_000538_190 Hb_000538_190 Hb_020178_050--Hb_000538_190 Hb_120470_010--Hb_000526_060 Hb_007818_030 Hb_007818_030 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_120470_010--Hb_004032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65395 14.849 4.39144 3.21822 4.16452 6.67968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475966 0.498485 3.71654 7.43585 3.41127

CAGE analysis