Hb_000941_010

Information

Type -
Description -
Location Contig941: 10687-12868
Sequence    

Annotation

kegg
ID rcu:RCOM_0504460
description hypothetical protein
nr
ID XP_002530723.1
description hypothetical protein RCOM_0504460 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0504460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63165: 10646-12743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_010 0.0 - - hypothetical protein RCOM_0504460 [Ricinus communis]
2 Hb_001437_260 0.070397562 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
3 Hb_001104_020 0.0955099184 - - DNA binding protein, putative [Ricinus communis]
4 Hb_002918_120 0.1004614666 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000732_220 0.1005762953 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
6 Hb_000024_150 0.1055263307 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
7 Hb_000731_280 0.108077797 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
8 Hb_000018_120 0.1095676169 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_015001_030 0.1099299415 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
10 Hb_000359_180 0.1104848807 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004832_010 0.1110490671 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004446_060 0.111327572 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_001284_070 0.1134820703 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001195_740 0.1173173014 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
15 Hb_001310_060 0.1182718875 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_002805_180 0.118933025 - - conserved hypothetical protein [Ricinus communis]
17 Hb_021346_020 0.1198895922 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
18 Hb_001638_150 0.1202474599 - - acyltransferase, putative [Ricinus communis]
19 Hb_001135_010 0.1220596201 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
20 Hb_137272_010 0.1257340444 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_000941_010 Hb_000941_010 Hb_001437_260 Hb_001437_260 Hb_000941_010--Hb_001437_260 Hb_001104_020 Hb_001104_020 Hb_000941_010--Hb_001104_020 Hb_002918_120 Hb_002918_120 Hb_000941_010--Hb_002918_120 Hb_000732_220 Hb_000732_220 Hb_000941_010--Hb_000732_220 Hb_000024_150 Hb_000024_150 Hb_000941_010--Hb_000024_150 Hb_000731_280 Hb_000731_280 Hb_000941_010--Hb_000731_280 Hb_004446_060 Hb_004446_060 Hb_001437_260--Hb_004446_060 Hb_002805_180 Hb_002805_180 Hb_001437_260--Hb_002805_180 Hb_001437_260--Hb_002918_120 Hb_004832_010 Hb_004832_010 Hb_001437_260--Hb_004832_010 Hb_001437_260--Hb_001104_020 Hb_001104_020--Hb_000732_220 Hb_093218_010 Hb_093218_010 Hb_001104_020--Hb_093218_010 Hb_000152_120 Hb_000152_120 Hb_001104_020--Hb_000152_120 Hb_005892_040 Hb_005892_040 Hb_001104_020--Hb_005892_040 Hb_000951_090 Hb_000951_090 Hb_001104_020--Hb_000951_090 Hb_019570_010 Hb_019570_010 Hb_001104_020--Hb_019570_010 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_000732_220--Hb_019570_010 Hb_000732_220--Hb_000152_120 Hb_000359_180 Hb_000359_180 Hb_000732_220--Hb_000359_180 Hb_000732_220--Hb_002805_180 Hb_004592_010 Hb_004592_010 Hb_000732_220--Hb_004592_010 Hb_000592_100 Hb_000592_100 Hb_000024_150--Hb_000592_100 Hb_000010_440 Hb_000010_440 Hb_000024_150--Hb_000010_440 Hb_024682_030 Hb_024682_030 Hb_000024_150--Hb_024682_030 Hb_000365_430 Hb_000365_430 Hb_000024_150--Hb_000365_430 Hb_002817_030 Hb_002817_030 Hb_000024_150--Hb_002817_030 Hb_005993_030 Hb_005993_030 Hb_000731_280--Hb_005993_030 Hb_000731_280--Hb_002918_120 Hb_004117_280 Hb_004117_280 Hb_000731_280--Hb_004117_280 Hb_000731_280--Hb_000024_150 Hb_000731_280--Hb_001437_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0143755 2.0861 12.5421 7.41374 0.0144051 0.0145108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0257749 0.0483467 6.28983 4.0908

CAGE analysis