Hb_000941_080

Information

Type transcription factor
Description TF Family: FAR1
Location Contig941: 87578-91539
Sequence    

Annotation

kegg
ID cic:CICLE_v10010993mg
description hypothetical protein
nr
ID XP_011039465.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
swissprot
ID Q3E7I5
description Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1
trembl
ID V4S8C7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010993mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63168: 87822-88918 , PASA_asmbl_63169: 89102-89587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_080 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
2 Hb_001410_130 0.0501813395 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
3 Hb_006054_030 0.0709391978 - - PREDICTED: protein GPR107-like [Jatropha curcas]
4 Hb_001911_010 0.0861981861 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
5 Hb_001009_090 0.086384763 - - CDK protein [Hevea brasiliensis]
6 Hb_002119_090 0.0937248321 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
7 Hb_000270_230 0.0960390659 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
8 Hb_003605_220 0.0972591776 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
9 Hb_000460_060 0.0976312569 - - importin beta-1, putative [Ricinus communis]
10 Hb_020805_150 0.0987305853 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_007031_040 0.099919661 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
12 Hb_000069_780 0.1020977548 - - atpob1, putative [Ricinus communis]
13 Hb_000421_110 0.1031743437 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
14 Hb_000270_110 0.1042497117 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
15 Hb_004785_030 0.1079442458 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
16 Hb_044653_020 0.1090149092 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
17 Hb_001257_100 0.109402903 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
18 Hb_002928_190 0.1094859827 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
19 Hb_000134_340 0.1115421836 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
20 Hb_000649_250 0.1120679867 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000941_080 Hb_000941_080 Hb_001410_130 Hb_001410_130 Hb_000941_080--Hb_001410_130 Hb_006054_030 Hb_006054_030 Hb_000941_080--Hb_006054_030 Hb_001911_010 Hb_001911_010 Hb_000941_080--Hb_001911_010 Hb_001009_090 Hb_001009_090 Hb_000941_080--Hb_001009_090 Hb_002119_090 Hb_002119_090 Hb_000941_080--Hb_002119_090 Hb_000270_230 Hb_000270_230 Hb_000941_080--Hb_000270_230 Hb_001410_130--Hb_001009_090 Hb_001410_130--Hb_001911_010 Hb_001410_130--Hb_006054_030 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_000069_780 Hb_000069_780 Hb_006054_030--Hb_000069_780 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_159295_010 Hb_159295_010 Hb_001911_010--Hb_159295_010 Hb_007031_040 Hb_007031_040 Hb_001911_010--Hb_007031_040 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_000421_110 Hb_000421_110 Hb_001911_010--Hb_000421_110 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000163_230 Hb_000163_230 Hb_001009_090--Hb_000163_230 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_000186_200 Hb_000186_200 Hb_001009_090--Hb_000186_200 Hb_004785_030 Hb_004785_030 Hb_002119_090--Hb_004785_030 Hb_000700_060 Hb_000700_060 Hb_002119_090--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_006738_050 Hb_006738_050 Hb_002119_090--Hb_006738_050 Hb_001257_100 Hb_001257_100 Hb_002119_090--Hb_001257_100 Hb_002284_170 Hb_002284_170 Hb_002119_090--Hb_002284_170 Hb_000270_230--Hb_000069_780 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_000270_230--Hb_001257_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.644689 3.79713 1.52444 1.82662 0.85024 0.845485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588176 0.273452 0.913339 1.08126 1.01746

CAGE analysis