Hb_000944_010

Information

Type -
Description -
Location Contig944: 16191-17600
Sequence    

Annotation

kegg
ID sly:104646012
description uncharacterized LOC104646012
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5BKJ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018924 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000944_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_003400_030 9.82846e-05 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
3 Hb_002400_450 0.0048254115 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
4 Hb_000260_190 0.0072678392 - - -
5 Hb_008473_010 0.0106791256 - - PREDICTED: laccase-14-like [Jatropha curcas]
6 Hb_034667_010 0.0114274435 - - -
7 Hb_091369_010 0.0116623174 - - -
8 Hb_002673_050 0.0136929531 - - -
9 Hb_008151_030 0.0179293356 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_010399_020 0.0218332347 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_013205_010 0.0542103591 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_108404_010 0.0621475201 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_128287_010 0.0808749253 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000204_180 0.1220749544 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_027394_010 0.1311336492 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_068347_020 0.1311548204 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_009066_010 0.1362197224 - - -
18 Hb_000227_110 0.1496957161 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
19 Hb_021068_020 0.1569161768 - - -
20 Hb_002141_010 0.1613180749 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000944_010 Hb_000944_010 Hb_003400_030 Hb_003400_030 Hb_000944_010--Hb_003400_030 Hb_002400_450 Hb_002400_450 Hb_000944_010--Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_000944_010--Hb_000260_190 Hb_008473_010 Hb_008473_010 Hb_000944_010--Hb_008473_010 Hb_034667_010 Hb_034667_010 Hb_000944_010--Hb_034667_010 Hb_091369_010 Hb_091369_010 Hb_000944_010--Hb_091369_010 Hb_003400_030--Hb_002400_450 Hb_003400_030--Hb_000260_190 Hb_003400_030--Hb_008473_010 Hb_003400_030--Hb_034667_010 Hb_003400_030--Hb_091369_010 Hb_002400_450--Hb_000260_190 Hb_002400_450--Hb_034667_010 Hb_008151_030 Hb_008151_030 Hb_002400_450--Hb_008151_030 Hb_002400_450--Hb_008473_010 Hb_000260_190--Hb_034667_010 Hb_000260_190--Hb_008151_030 Hb_010399_020 Hb_010399_020 Hb_000260_190--Hb_010399_020 Hb_008473_010--Hb_091369_010 Hb_002673_050 Hb_002673_050 Hb_008473_010--Hb_002673_050 Hb_008473_010--Hb_000260_190 Hb_034667_010--Hb_008151_030 Hb_034667_010--Hb_010399_020 Hb_091369_010--Hb_002673_050 Hb_091369_010--Hb_002400_450 Hb_091369_010--Hb_000260_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0309034 0.0289712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis