Hb_000946_060

Information

Type -
Description -
Location Contig946: 67983-73128
Sequence    

Annotation

kegg
ID rcu:RCOM_1417160
description chaperone protein DNAj, putative
nr
ID XP_012085515.1
description PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID A0A067LLP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63259: 67949-69183 , PASA_asmbl_63260: 71985-73219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_060 0.0 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X2 [Jatropha curcas]
2 Hb_002716_110 0.1662250101 - - PREDICTED: interaptin [Jatropha curcas]
3 Hb_032568_010 0.1921921377 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
4 Hb_005305_010 0.193997899 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
5 Hb_074109_010 0.196444338 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
6 Hb_004357_060 0.2009366739 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
7 Hb_010583_030 0.2010172523 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
8 Hb_008707_040 0.2017245575 - - conserved hypothetical protein [Ricinus communis]
9 Hb_121089_010 0.2062801898 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
10 Hb_000679_030 0.206501688 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
11 Hb_054865_010 0.2079983007 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
12 Hb_001623_380 0.2086262609 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
13 Hb_002890_300 0.2115450915 - - abhydrolase domain containing, putative [Ricinus communis]
14 Hb_006153_150 0.2195716806 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
15 Hb_004102_080 0.2201603391 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
16 Hb_000243_060 0.2225849492 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
17 Hb_056196_010 0.2241947357 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
18 Hb_003688_140 0.2244988808 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
19 Hb_000011_560 0.2253141948 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
20 Hb_002183_080 0.2268019988 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000946_060 Hb_000946_060 Hb_002716_110 Hb_002716_110 Hb_000946_060--Hb_002716_110 Hb_032568_010 Hb_032568_010 Hb_000946_060--Hb_032568_010 Hb_005305_010 Hb_005305_010 Hb_000946_060--Hb_005305_010 Hb_074109_010 Hb_074109_010 Hb_000946_060--Hb_074109_010 Hb_004357_060 Hb_004357_060 Hb_000946_060--Hb_004357_060 Hb_010583_030 Hb_010583_030 Hb_000946_060--Hb_010583_030 Hb_000679_030 Hb_000679_030 Hb_002716_110--Hb_000679_030 Hb_002397_050 Hb_002397_050 Hb_002716_110--Hb_002397_050 Hb_005493_010 Hb_005493_010 Hb_002716_110--Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_002716_110--Hb_002817_050 Hb_003688_140 Hb_003688_140 Hb_002716_110--Hb_003688_140 Hb_000054_030 Hb_000054_030 Hb_002716_110--Hb_000054_030 Hb_002890_300 Hb_002890_300 Hb_032568_010--Hb_002890_300 Hb_002391_320 Hb_002391_320 Hb_032568_010--Hb_002391_320 Hb_005488_130 Hb_005488_130 Hb_032568_010--Hb_005488_130 Hb_007101_260 Hb_007101_260 Hb_032568_010--Hb_007101_260 Hb_000753_110 Hb_000753_110 Hb_032568_010--Hb_000753_110 Hb_000116_020 Hb_000116_020 Hb_032568_010--Hb_000116_020 Hb_000834_060 Hb_000834_060 Hb_005305_010--Hb_000834_060 Hb_033363_050 Hb_033363_050 Hb_005305_010--Hb_033363_050 Hb_005305_010--Hb_074109_010 Hb_005305_010--Hb_003688_140 Hb_005305_010--Hb_004357_060 Hb_000002_300 Hb_000002_300 Hb_005305_010--Hb_000002_300 Hb_000005_100 Hb_000005_100 Hb_074109_010--Hb_000005_100 Hb_074109_010--Hb_003688_140 Hb_003055_070 Hb_003055_070 Hb_074109_010--Hb_003055_070 Hb_004648_030 Hb_004648_030 Hb_074109_010--Hb_004648_030 Hb_074109_010--Hb_000834_060 Hb_004223_270 Hb_004223_270 Hb_074109_010--Hb_004223_270 Hb_004162_270 Hb_004162_270 Hb_004357_060--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_004357_060--Hb_005784_030 Hb_006420_010 Hb_006420_010 Hb_004357_060--Hb_006420_010 Hb_004357_060--Hb_000054_030 Hb_005917_020 Hb_005917_020 Hb_004357_060--Hb_005917_020 Hb_007904_060 Hb_007904_060 Hb_004357_060--Hb_007904_060 Hb_002085_090 Hb_002085_090 Hb_010583_030--Hb_002085_090 Hb_000202_070 Hb_000202_070 Hb_010583_030--Hb_000202_070 Hb_010583_030--Hb_074109_010 Hb_010583_030--Hb_003055_070 Hb_000940_030 Hb_000940_030 Hb_010583_030--Hb_000940_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0694286 6.84656 24.5132 10.5964 0.0237071 0.0501507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.46109 9.63595 0.213537 2.7487 18.7887

CAGE analysis