Hb_000946_090

Information

Type -
Description -
Location Contig946: 101724-116237
Sequence    

Annotation

kegg
ID tcc:TCM_002774
description Cyclin family protein isoform 1
nr
ID XP_012085462.1
description PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FJK7
description Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1
trembl
ID A0A061DV01
description Cyclin family protein isoform 1 OS=Theobroma cacao GN=TCM_002774 PE=3 SV=1
Gene Ontology
ID GO:0019901
description cyclin family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63262: 101880-116226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_090 0.0 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
2 Hb_001804_080 0.0615837688 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
3 Hb_001931_010 0.0698609172 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
4 Hb_000419_020 0.0773813528 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_006326_040 0.0780477306 - - conserved hypothetical protein [Ricinus communis]
6 Hb_032202_100 0.0787726902 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_002968_040 0.0811913322 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
8 Hb_000116_490 0.0814443541 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
9 Hb_161574_020 0.0817339063 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
10 Hb_045003_010 0.0817771948 - - Stomatin-1, putative [Ricinus communis]
11 Hb_004984_030 0.0838129033 - - protein with unknown function [Ricinus communis]
12 Hb_002171_060 0.0839611633 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015299_030 0.0852227265 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
14 Hb_000599_260 0.0863185496 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
15 Hb_002811_170 0.0868151613 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
16 Hb_004109_340 0.0878021479 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
17 Hb_006846_130 0.0903820399 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
18 Hb_006573_190 0.090551276 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
19 Hb_000505_130 0.0933670561 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
20 Hb_044653_040 0.0945072208 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000946_090 Hb_000946_090 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_001931_010 Hb_001931_010 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_032202_100 Hb_032202_100 Hb_000946_090--Hb_032202_100 Hb_002968_040 Hb_002968_040 Hb_000946_090--Hb_002968_040 Hb_000116_490 Hb_000116_490 Hb_001804_080--Hb_000116_490 Hb_001804_080--Hb_032202_100 Hb_000270_310 Hb_000270_310 Hb_001804_080--Hb_000270_310 Hb_002307_180 Hb_002307_180 Hb_001804_080--Hb_002307_180 Hb_005245_120 Hb_005245_120 Hb_001804_080--Hb_005245_120 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_006326_040--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_006326_040--Hb_000505_130 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_005843_140 Hb_005843_140 Hb_002968_040--Hb_005843_140 Hb_012799_170 Hb_012799_170 Hb_002968_040--Hb_012799_170 Hb_044653_040 Hb_044653_040 Hb_002968_040--Hb_044653_040 Hb_003622_030 Hb_003622_030 Hb_002968_040--Hb_003622_030 Hb_006355_040 Hb_006355_040 Hb_002968_040--Hb_006355_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76939 6.87069 20.5075 21.1141 7.97994 8.59543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2037 30.3746 10.6144 13.7945 12.125

CAGE analysis