Hb_000947_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig947: 79-862
Sequence    

Annotation

kegg
ID cit:102614307
description putative disease resistance protein RGA1-like
nr
ID XP_012086247.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067DFB4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036466mg PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000947_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_003043_130 0.0616145762 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
3 Hb_005575_010 0.0826652219 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
4 Hb_174168_010 0.08934929 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_005181_190 0.0934894724 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
6 Hb_067558_010 0.0950357296 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
7 Hb_000866_060 0.1016542467 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
8 Hb_000239_050 0.1022766712 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
9 Hb_003453_060 0.1030339291 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
10 Hb_005050_030 0.1069838667 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
11 Hb_078582_010 0.1075576393 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
12 Hb_009693_010 0.1118693067 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
13 Hb_040718_010 0.1143588966 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
14 Hb_001369_460 0.1154077195 - - vacuolar invertase [Manihot esculenta]
15 Hb_004855_080 0.1164079148 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
16 Hb_000759_040 0.1166406505 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
17 Hb_004602_010 0.1177224017 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
18 Hb_006938_060 0.1192962871 - - nutrient reservoir, putative [Ricinus communis]
19 Hb_127263_010 0.1244715834 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
20 Hb_000260_750 0.1251747512 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000947_010 Hb_000947_010 Hb_003043_130 Hb_003043_130 Hb_000947_010--Hb_003043_130 Hb_005575_010 Hb_005575_010 Hb_000947_010--Hb_005575_010 Hb_174168_010 Hb_174168_010 Hb_000947_010--Hb_174168_010 Hb_005181_190 Hb_005181_190 Hb_000947_010--Hb_005181_190 Hb_067558_010 Hb_067558_010 Hb_000947_010--Hb_067558_010 Hb_000866_060 Hb_000866_060 Hb_000947_010--Hb_000866_060 Hb_003043_130--Hb_000866_060 Hb_003453_060 Hb_003453_060 Hb_003043_130--Hb_003453_060 Hb_003043_130--Hb_005575_010 Hb_000759_040 Hb_000759_040 Hb_003043_130--Hb_000759_040 Hb_000239_050 Hb_000239_050 Hb_003043_130--Hb_000239_050 Hb_005575_010--Hb_003453_060 Hb_002025_290 Hb_002025_290 Hb_005575_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_005575_010--Hb_078582_010 Hb_003119_130 Hb_003119_130 Hb_005575_010--Hb_003119_130 Hb_001369_460 Hb_001369_460 Hb_174168_010--Hb_001369_460 Hb_007520_050 Hb_007520_050 Hb_174168_010--Hb_007520_050 Hb_174168_010--Hb_003043_130 Hb_002391_030 Hb_002391_030 Hb_174168_010--Hb_002391_030 Hb_040718_010 Hb_040718_010 Hb_174168_010--Hb_040718_010 Hb_005181_190--Hb_067558_010 Hb_000041_210 Hb_000041_210 Hb_005181_190--Hb_000041_210 Hb_004116_050 Hb_004116_050 Hb_005181_190--Hb_004116_050 Hb_005181_190--Hb_000239_050 Hb_023732_080 Hb_023732_080 Hb_005181_190--Hb_023732_080 Hb_067558_010--Hb_000041_210 Hb_067558_010--Hb_004116_050 Hb_067558_010--Hb_000239_050 Hb_001409_080 Hb_001409_080 Hb_067558_010--Hb_001409_080 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000866_060--Hb_000239_050 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_000866_060--Hb_001409_080 Hb_000300_110 Hb_000300_110 Hb_000866_060--Hb_000300_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0258383 0.433038 0.142382 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.112962 0.334418

CAGE analysis