Hb_000948_040

Information

Type -
Description -
Location Contig948: 26705-30742
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18690g
description POPTRDRAFT_1077107; hypothetical protein
nr
ID XP_012081142.1
description PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID A0A067LNK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10285 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_040 0.0 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
2 Hb_005066_010 0.011550301 - - FAD-binding domain-containing family protein [Populus trichocarpa]
3 Hb_033865_020 0.0154230244 - - -
4 Hb_000205_290 0.0278767534 - - -
5 Hb_002757_050 0.0437651112 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
6 Hb_001546_090 0.0465611227 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
7 Hb_000671_010 0.0553273238 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
8 Hb_011161_060 0.0584983778 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
9 Hb_001948_020 0.0654843789 - - -
10 Hb_036291_010 0.0774762125 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
11 Hb_025490_030 0.0818052996 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
12 Hb_000699_060 0.085244962 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
13 Hb_000720_010 0.0860565735 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
14 Hb_073973_050 0.0997512254 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
15 Hb_090894_010 0.1013386057 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
16 Hb_124247_030 0.1023367099 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
17 Hb_009545_040 0.1039930761 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001165_040 0.1076643629 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
19 Hb_007845_020 0.108221339 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
20 Hb_126535_010 0.1095230093 - - hypothetical protein JCGZ_09554 [Jatropha curcas]

Gene co-expression network

sample Hb_000948_040 Hb_000948_040 Hb_005066_010 Hb_005066_010 Hb_000948_040--Hb_005066_010 Hb_033865_020 Hb_033865_020 Hb_000948_040--Hb_033865_020 Hb_000205_290 Hb_000205_290 Hb_000948_040--Hb_000205_290 Hb_002757_050 Hb_002757_050 Hb_000948_040--Hb_002757_050 Hb_001546_090 Hb_001546_090 Hb_000948_040--Hb_001546_090 Hb_000671_010 Hb_000671_010 Hb_000948_040--Hb_000671_010 Hb_005066_010--Hb_033865_020 Hb_005066_010--Hb_001546_090 Hb_005066_010--Hb_000205_290 Hb_001948_020 Hb_001948_020 Hb_005066_010--Hb_001948_020 Hb_005066_010--Hb_002757_050 Hb_033865_020--Hb_001546_090 Hb_033865_020--Hb_000205_290 Hb_033865_020--Hb_001948_020 Hb_033865_020--Hb_002757_050 Hb_000205_290--Hb_002757_050 Hb_000205_290--Hb_000671_010 Hb_011161_060 Hb_011161_060 Hb_000205_290--Hb_011161_060 Hb_002757_050--Hb_000671_010 Hb_002757_050--Hb_011161_060 Hb_000720_010 Hb_000720_010 Hb_002757_050--Hb_000720_010 Hb_001546_090--Hb_001948_020 Hb_036291_010 Hb_036291_010 Hb_001546_090--Hb_036291_010 Hb_073973_050 Hb_073973_050 Hb_001546_090--Hb_073973_050 Hb_000671_010--Hb_011161_060 Hb_000671_010--Hb_000720_010 Hb_001213_010 Hb_001213_010 Hb_000671_010--Hb_001213_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0717608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.02705 0

CAGE analysis