Hb_000948_160

Information

Type -
Description -
Location Contig948: 155956-159537
Sequence    

Annotation

kegg
ID pmum:103341798
description 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic
nr
ID XP_012072963.1
description PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
swissprot
ID O82782
description 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic OS=Arabidopsis thaliana GN=HISN3 PE=2 SV=1
trembl
ID A0A067KMG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06751 PE=3 SV=1
Gene Ontology
ID GO:0003949
description 1-(5-phosphoribosyl)-5-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63321: 155967-157433 , PASA_asmbl_63322: 157476-159424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_160 0.0 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
2 Hb_000431_170 0.0528422017 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
3 Hb_001386_040 0.0602456454 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
4 Hb_189216_020 0.0615642544 - - PREDICTED: translin [Jatropha curcas]
5 Hb_001599_040 0.0624521683 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
6 Hb_002994_030 0.065973798 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
7 Hb_000078_120 0.0663953876 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
8 Hb_006831_140 0.0673108274 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_000392_430 0.0678159579 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
10 Hb_002197_050 0.0680637122 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
11 Hb_001470_030 0.0698611144 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
12 Hb_001314_050 0.0714662088 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
13 Hb_000081_160 0.0715402413 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
14 Hb_001489_090 0.0734107542 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
15 Hb_010423_030 0.0736408928 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
16 Hb_000460_030 0.0738680121 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
17 Hb_000069_720 0.0740279515 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
18 Hb_002078_350 0.0744413208 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
19 Hb_001189_070 0.0757028563 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
20 Hb_007928_030 0.0758053474 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]

Gene co-expression network

sample Hb_000948_160 Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_189216_020 Hb_189216_020 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000390_300 Hb_000390_300 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_031862_100 Hb_031862_100 Hb_001386_040--Hb_031862_100 Hb_002183_060 Hb_002183_060 Hb_001386_040--Hb_002183_060 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_001386_040--Hb_000465_390 Hb_000053_020 Hb_000053_020 Hb_001386_040--Hb_000053_020 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_189216_020--Hb_002994_030 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_002994_030--Hb_000078_120 Hb_000696_330 Hb_000696_330 Hb_002994_030--Hb_000696_330 Hb_002994_030--Hb_006831_140 Hb_002994_030--Hb_001470_030 Hb_000078_120--Hb_006831_140 Hb_000078_120--Hb_000696_330 Hb_002078_350 Hb_002078_350 Hb_000078_120--Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22226 4.00488 4.71274 5.58681 4.07735 5.22776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07336 9.2094 4.28263 7.41703 5.02908

CAGE analysis