Hb_000948_230

Information

Type -
Description -
Location Contig948: 227636-234100
Sequence    

Annotation

kegg
ID rcu:RCOM_0516960
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002528743.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID A7RWD2
description Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1
trembl
ID B9SRX4
description Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Ricinus communis GN=RCOM_0516960 PE=3 SV=1
Gene Ontology
ID GO:0016740
description probable cytosolic iron-sulfur protein assembly protein ciao1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63332: 227684-234100
cDNA
(Sanger)
(ID:Location)		 010_D19.ab1: 227684-229663 , 016_G17r.ab1: 224202-226940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_230 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_003994_230 0.0568337998 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
3 Hb_013575_010 0.0613598934 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
4 Hb_003057_060 0.0625125093 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004990_010 0.0636354324 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
6 Hb_000720_040 0.0636826093 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
7 Hb_001511_060 0.0660638617 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
8 Hb_000300_500 0.0708130799 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
9 Hb_002681_100 0.072463296 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
10 Hb_004627_040 0.0743738588 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_001278_100 0.0745125137 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
12 Hb_002936_010 0.0760435577 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
13 Hb_002641_060 0.0760868635 - - prefoldin subunit, putative [Ricinus communis]
14 Hb_000086_170 0.0766371644 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
15 Hb_000025_180 0.0770981166 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
16 Hb_161574_020 0.0771044966 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
17 Hb_021419_030 0.0781503442 - - hypothetical protein glysoja_023295 [Glycine soja]
18 Hb_007441_190 0.0802686427 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
19 Hb_000260_350 0.0822472681 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003528_030 0.0823421218 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]

Gene co-expression network

sample Hb_000948_230 Hb_000948_230 Hb_003994_230 Hb_003994_230 Hb_000948_230--Hb_003994_230 Hb_013575_010 Hb_013575_010 Hb_000948_230--Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_000948_230--Hb_003057_060 Hb_004990_010 Hb_004990_010 Hb_000948_230--Hb_004990_010 Hb_000720_040 Hb_000720_040 Hb_000948_230--Hb_000720_040 Hb_001511_060 Hb_001511_060 Hb_000948_230--Hb_001511_060 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160 Hb_013575_010--Hb_003057_060 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_003057_060--Hb_002681_100 Hb_003057_060--Hb_000666_100 Hb_161574_020 Hb_161574_020 Hb_003057_060--Hb_161574_020 Hb_004627_040 Hb_004627_040 Hb_003057_060--Hb_004627_040 Hb_004990_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_004990_010--Hb_093458_040 Hb_002989_020 Hb_002989_020 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_000720_040--Hb_002936_010 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_001511_060--Hb_000260_350 Hb_168978_010 Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.3962 8.07694 11.4135 14.9729 10.0494 8.95327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.51871 12.983 10.3152 9.38079 6.09361

CAGE analysis