Hb_000948_240

Information

Type -
Description -
Location Contig948: 234956-235480
Sequence    

Annotation

kegg
ID rcu:RCOM_0516950
description hypothetical protein
nr
ID XP_002528742.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRX3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0516950 PE=4 SV=1
Gene Ontology
ID GO:0009744
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002592_040 0.0484737396 - - ACC oxidase 3 [Hevea brasiliensis]
3 Hb_001862_040 0.0500794008 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
4 Hb_005375_090 0.0528024846 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
5 Hb_003747_090 0.05819595 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000334_290 0.0582401628 - - monovalent cation:proton antiporter, putative [Ricinus communis]
7 Hb_013405_110 0.0593204074 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_082402_020 0.0606234018 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
9 Hb_003032_080 0.0627456578 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000985_150 0.0653095436 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
11 Hb_004048_080 0.06641898 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
12 Hb_001006_160 0.0664473581 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002890_170 0.0682276089 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
14 Hb_003020_120 0.0686432556 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
15 Hb_000703_340 0.0697181716 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_002785_040 0.070434062 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
17 Hb_003038_060 0.0709478524 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
18 Hb_003050_380 0.0729090757 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
19 Hb_002400_200 0.0751867347 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_163566_020 0.0756447973 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000948_240 Hb_000948_240 Hb_002592_040 Hb_002592_040 Hb_000948_240--Hb_002592_040 Hb_001862_040 Hb_001862_040 Hb_000948_240--Hb_001862_040 Hb_005375_090 Hb_005375_090 Hb_000948_240--Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_000948_240--Hb_003747_090 Hb_000334_290 Hb_000334_290 Hb_000948_240--Hb_000334_290 Hb_013405_110 Hb_013405_110 Hb_000948_240--Hb_013405_110 Hb_002592_040--Hb_013405_110 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_002592_040--Hb_001862_040 Hb_002592_040--Hb_003747_090 Hb_003032_080 Hb_003032_080 Hb_001862_040--Hb_003032_080 Hb_082402_020 Hb_082402_020 Hb_001862_040--Hb_082402_020 Hb_002890_170 Hb_002890_170 Hb_001862_040--Hb_002890_170 Hb_002014_150 Hb_002014_150 Hb_001862_040--Hb_002014_150 Hb_003050_380 Hb_003050_380 Hb_001862_040--Hb_003050_380 Hb_005375_090--Hb_003747_090 Hb_002785_040 Hb_002785_040 Hb_005375_090--Hb_002785_040 Hb_005375_090--Hb_013405_110 Hb_005375_090--Hb_002890_170 Hb_004129_170 Hb_004129_170 Hb_005375_090--Hb_004129_170 Hb_005375_090--Hb_082402_020 Hb_003747_090--Hb_002785_040 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_003747_090--Hb_002890_170 Hb_003747_090--Hb_082402_020 Hb_000985_150 Hb_000985_150 Hb_000334_290--Hb_000985_150 Hb_002014_140 Hb_002014_140 Hb_000334_290--Hb_002014_140 Hb_006901_010 Hb_006901_010 Hb_000334_290--Hb_006901_010 Hb_002893_200 Hb_002893_200 Hb_000334_290--Hb_002893_200 Hb_004525_010 Hb_004525_010 Hb_000334_290--Hb_004525_010 Hb_000334_290--Hb_082402_020 Hb_013405_110--Hb_002785_040 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0678155 0.0548364 23.9388 6.68628 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124021 0.0974425 0 0 39.575

CAGE analysis