Hb_000949_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig949: 129913-142689
Sequence    

Annotation

kegg
ID rcu:RCOM_0333030
description ethylene receptor, putative (EC:2.7.13.3)
nr
ID XP_012077870.1
description PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
swissprot
ID Q9ZWL6
description Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1
trembl
ID A0A067KLG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13544 PE=4 SV=1
Gene Ontology
ID GO:0005789
description ethylene receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63380: 129932-142906 , PASA_asmbl_63381: 136916-137177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000949_020 0.0 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
2 Hb_000120_910 0.0588528923 - - plant ubiquilin, putative [Ricinus communis]
3 Hb_001673_050 0.0595742828 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
4 Hb_004429_010 0.0599691199 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_002284_170 0.0624420797 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
6 Hb_004129_070 0.0654118404 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
7 Hb_004517_020 0.0658627906 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
8 Hb_000099_040 0.0663950366 - - unnamed protein product [Coffea canephora]
9 Hb_000174_060 0.0667205132 - - zinc finger family protein [Populus trichocarpa]
10 Hb_002027_280 0.0676256814 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
11 Hb_001723_010 0.0694801394 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
12 Hb_001454_170 0.0697892975 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
13 Hb_001318_070 0.0703927884 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
14 Hb_000243_210 0.0721057737 - - protein with unknown function [Ricinus communis]
15 Hb_004032_230 0.0737335399 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
16 Hb_000352_070 0.0747504555 - - Potassium transporter, putative [Ricinus communis]
17 Hb_000809_160 0.074819717 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
18 Hb_001545_150 0.0751588253 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
19 Hb_000809_170 0.0761405796 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
20 Hb_027654_020 0.0766677869 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]

Gene co-expression network

sample Hb_000949_020 Hb_000949_020 Hb_000120_910 Hb_000120_910 Hb_000949_020--Hb_000120_910 Hb_001673_050 Hb_001673_050 Hb_000949_020--Hb_001673_050 Hb_004429_010 Hb_004429_010 Hb_000949_020--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000949_020--Hb_002284_170 Hb_004129_070 Hb_004129_070 Hb_000949_020--Hb_004129_070 Hb_004517_020 Hb_004517_020 Hb_000949_020--Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_001673_050--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_009252_050 Hb_009252_050 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002284_170--Hb_002092_070 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_002284_170--Hb_009252_050 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_004517_020--Hb_001723_010 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1837 53.8257 33.895 32.7496 37.8605 27.1769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7558 14.0303 23.4654 29.8501 27.5497

CAGE analysis