Hb_000950_040

Information

Type -
Description -
Location Contig950: 58540-63535
Sequence    

Annotation

kegg
ID rcu:RCOM_1099410
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002532129.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q9M2L4
description Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=1 SV=1
trembl
ID B9T1L0
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1099410 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63396: 58825-62903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000950_040 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_000732_230 0.0656814258 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
3 Hb_052117_010 0.082658644 - - kinase, putative [Ricinus communis]
4 Hb_000227_320 0.0856036745 - - unnamed protein product [Vitis vinifera]
5 Hb_000196_010 0.0882264457 - - Patellin-5, putative [Ricinus communis]
6 Hb_006949_060 0.0951708301 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_115513_040 0.0971574675 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002685_030 0.1014259129 - - PREDICTED: protein SMG7L [Jatropha curcas]
9 Hb_000363_180 0.1038644956 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
10 Hb_009745_010 0.1066800575 - - cellulose synthase-like protein [Populus tomentosa]
11 Hb_001522_040 0.1069746301 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_033363_010 0.1075798717 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
13 Hb_001898_020 0.1091166207 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
14 Hb_001009_150 0.1123273835 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
15 Hb_001951_240 0.1159747449 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
16 Hb_014720_030 0.116523869 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
17 Hb_002849_070 0.1177839467 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
18 Hb_000072_020 0.1185532888 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_000997_340 0.1223412828 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_002316_170 0.1226581712 - - purine permease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000950_040 Hb_000950_040 Hb_000732_230 Hb_000732_230 Hb_000950_040--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000950_040--Hb_052117_010 Hb_000227_320 Hb_000227_320 Hb_000950_040--Hb_000227_320 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_001898_020 Hb_001898_020 Hb_052117_010--Hb_001898_020 Hb_001522_040 Hb_001522_040 Hb_052117_010--Hb_001522_040 Hb_009745_010 Hb_009745_010 Hb_052117_010--Hb_009745_010 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340 Hb_052117_010--Hb_000196_010 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000227_320--Hb_006949_060 Hb_000196_010--Hb_009745_010 Hb_000363_180 Hb_000363_180 Hb_000196_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_000196_010--Hb_002909_100 Hb_000196_010--Hb_000732_230 Hb_010407_030 Hb_010407_030 Hb_006949_060--Hb_010407_030 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_001009_150 Hb_001009_150 Hb_006949_060--Hb_001009_150 Hb_002316_170 Hb_002316_170 Hb_006949_060--Hb_002316_170 Hb_083078_010 Hb_083078_010 Hb_115513_040--Hb_083078_010 Hb_115513_040--Hb_000227_320 Hb_115513_040--Hb_003050_150 Hb_001205_180 Hb_001205_180 Hb_115513_040--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99547 36.5484 21.3641 32.0042 6.40498 6.91265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48268 2.16574 1.78233 19.6172 17.8327

CAGE analysis