Hb_000950_070

Information

Type -
Description -
Location Contig950: 114915-117396
Sequence    

Annotation

kegg
ID rcu:RCOM_1099940
description hypothetical protein
nr
ID XP_012086208.1
description PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
swissprot
ID P40513
description Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1
trembl
ID E6NU92
description JHL06B08.3 protein OS=Jatropha curcas GN=JHL06B08.3 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63403: 114736-116987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000950_070 0.0 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
2 Hb_002471_250 0.1002561002 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
3 Hb_001396_210 0.1266421886 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000215_090 0.136047803 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
5 Hb_027792_010 0.1396621138 - - -
6 Hb_001517_050 0.1428563892 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
7 Hb_158144_010 0.1473309937 - - -
8 Hb_012340_090 0.1474979051 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
9 Hb_001712_070 0.1483441646 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
10 Hb_029351_010 0.1496554365 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_002284_210 0.1509066334 - - PREDICTED: protein canopy-1 [Jatropha curcas]
12 Hb_000905_120 0.1523766593 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
13 Hb_002946_190 0.1526764093 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
14 Hb_000270_470 0.1528761767 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
15 Hb_000413_060 0.1538402609 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
16 Hb_000163_100 0.1540631448 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
17 Hb_000975_220 0.1548580496 - - Histone H2B [Medicago truncatula]
18 Hb_003848_040 0.1567234663 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
19 Hb_000690_190 0.1569842641 - - 40S ribosomal protein S7, putative [Ricinus communis]
20 Hb_146255_020 0.1573207197 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]

Gene co-expression network

sample Hb_000950_070 Hb_000950_070 Hb_002471_250 Hb_002471_250 Hb_000950_070--Hb_002471_250 Hb_001396_210 Hb_001396_210 Hb_000950_070--Hb_001396_210 Hb_000215_090 Hb_000215_090 Hb_000950_070--Hb_000215_090 Hb_027792_010 Hb_027792_010 Hb_000950_070--Hb_027792_010 Hb_001517_050 Hb_001517_050 Hb_000950_070--Hb_001517_050 Hb_158144_010 Hb_158144_010 Hb_000950_070--Hb_158144_010 Hb_093666_010 Hb_093666_010 Hb_002471_250--Hb_093666_010 Hb_002471_250--Hb_000215_090 Hb_000270_470 Hb_000270_470 Hb_002471_250--Hb_000270_470 Hb_001186_090 Hb_001186_090 Hb_002471_250--Hb_001186_090 Hb_003848_040 Hb_003848_040 Hb_002471_250--Hb_003848_040 Hb_012340_090 Hb_012340_090 Hb_001396_210--Hb_012340_090 Hb_001025_090 Hb_001025_090 Hb_001396_210--Hb_001025_090 Hb_001396_210--Hb_003848_040 Hb_002092_120 Hb_002092_120 Hb_001396_210--Hb_002092_120 Hb_001105_170 Hb_001105_170 Hb_001396_210--Hb_001105_170 Hb_001396_210--Hb_000270_470 Hb_032202_100 Hb_032202_100 Hb_000215_090--Hb_032202_100 Hb_004357_050 Hb_004357_050 Hb_000215_090--Hb_004357_050 Hb_000130_270 Hb_000130_270 Hb_000215_090--Hb_000130_270 Hb_005288_130 Hb_005288_130 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_007894_210 Hb_007894_210 Hb_027792_010--Hb_007894_210 Hb_027792_010--Hb_002471_250 Hb_002119_080 Hb_002119_080 Hb_027792_010--Hb_002119_080 Hb_027792_010--Hb_000215_090 Hb_001077_070 Hb_001077_070 Hb_027792_010--Hb_001077_070 Hb_000300_260 Hb_000300_260 Hb_001517_050--Hb_000300_260 Hb_002284_150 Hb_002284_150 Hb_001517_050--Hb_002284_150 Hb_000789_320 Hb_000789_320 Hb_001517_050--Hb_000789_320 Hb_006816_100 Hb_006816_100 Hb_001517_050--Hb_006816_100 Hb_001517_050--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_001517_050--Hb_003213_010 Hb_000422_030 Hb_000422_030 Hb_158144_010--Hb_000422_030 Hb_000975_220 Hb_000975_220 Hb_158144_010--Hb_000975_220 Hb_001269_640 Hb_001269_640 Hb_158144_010--Hb_001269_640 Hb_158144_010--Hb_002284_150 Hb_158144_010--Hb_002092_120 Hb_006570_150 Hb_006570_150 Hb_158144_010--Hb_006570_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6451 3.98387 30.2751 11.3303 4.00832 12.381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.24777 17.0138 2.67104 7.13982 6.89166

CAGE analysis