Hb_000951_050

Information

Type -
Description -
Location Contig951: 125151-128164
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63411: 128132-145559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000951_050 0.0 - - -
2 Hb_000248_030 0.2230944506 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
3 Hb_101151_030 0.2287573319 - - -
4 Hb_032531_050 0.2316125048 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
5 Hb_032531_060 0.2438605706 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
6 Hb_000002_030 0.2440045887 - - -
7 Hb_002960_050 0.245277056 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
8 Hb_034579_010 0.2487235733 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
9 Hb_000805_300 0.2514909489 - - -
10 Hb_000248_010 0.2555697062 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
11 Hb_007083_050 0.2580204645 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
12 Hb_005933_010 0.2631004281 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_005731_140 0.2688375236 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
14 Hb_001235_060 0.2711720698 - - -
15 Hb_001969_050 0.2732026258 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
16 Hb_168343_010 0.2736358795 - - sensory transduction histidine kinase, putative [Ricinus communis]
17 Hb_000445_080 0.2738955622 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
18 Hb_079978_010 0.27487217 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
19 Hb_003623_020 0.2778144436 - - -
20 Hb_001846_050 0.2866559759 - - -

Gene co-expression network

sample Hb_000951_050 Hb_000951_050 Hb_000248_030 Hb_000248_030 Hb_000951_050--Hb_000248_030 Hb_101151_030 Hb_101151_030 Hb_000951_050--Hb_101151_030 Hb_032531_050 Hb_032531_050 Hb_000951_050--Hb_032531_050 Hb_032531_060 Hb_032531_060 Hb_000951_050--Hb_032531_060 Hb_000002_030 Hb_000002_030 Hb_000951_050--Hb_000002_030 Hb_002960_050 Hb_002960_050 Hb_000951_050--Hb_002960_050 Hb_000248_010 Hb_000248_010 Hb_000248_030--Hb_000248_010 Hb_005933_010 Hb_005933_010 Hb_000248_030--Hb_005933_010 Hb_001235_060 Hb_001235_060 Hb_000248_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_000248_030--Hb_002960_050 Hb_000805_300 Hb_000805_300 Hb_101151_030--Hb_000805_300 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_101151_030--Hb_001235_060 Hb_032531_040 Hb_032531_040 Hb_032531_050--Hb_032531_040 Hb_032531_050--Hb_000002_030 Hb_032531_050--Hb_001454_110 Hb_000316_090 Hb_000316_090 Hb_032531_050--Hb_000316_090 Hb_032531_050--Hb_000805_300 Hb_034579_010 Hb_034579_010 Hb_032531_050--Hb_034579_010 Hb_032531_060--Hb_034579_010 Hb_005731_140 Hb_005731_140 Hb_032531_060--Hb_005731_140 Hb_061581_010 Hb_061581_010 Hb_032531_060--Hb_061581_010 Hb_124141_010 Hb_124141_010 Hb_032531_060--Hb_124141_010 Hb_032531_060--Hb_000248_030 Hb_032531_060--Hb_005933_010 Hb_000002_030--Hb_000316_090 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_000002_030--Hb_001235_060 Hb_002960_050--Hb_000248_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_002783_060 Hb_002783_060 Hb_002960_050--Hb_002783_060 Hb_005965_010 Hb_005965_010 Hb_002960_050--Hb_005965_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.270942 0 0.336452 0.559153 10.0676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.678973 0.3556 1.39272 0.540953 0.610619

CAGE analysis