Hb_000951_060

Information

Type -
Description -
Location Contig951: 130299-139574
Sequence    

Annotation

kegg
ID rcu:RCOM_0818130
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002518331.1
description mads box protein, putative [Ricinus communis]
swissprot
ID A2RVQ5
description Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1
trembl
ID B9RX62
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0818130 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription factor 23-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63410: 133665-134046 , PASA_asmbl_63412: 130302-130483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000951_060 0.0 - - mads box protein, putative [Ricinus communis]
2 Hb_002835_170 0.1644901609 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
3 Hb_002849_210 0.1654954307 - - protein binding protein, putative [Ricinus communis]
4 Hb_000123_110 0.1687774006 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
5 Hb_001396_230 0.1708470411 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
6 Hb_001478_050 0.1709807673 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
7 Hb_006551_010 0.1736450017 - - electron transporter, putative [Ricinus communis]
8 Hb_000789_190 0.1754586058 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
9 Hb_003001_030 0.1784610937 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
10 Hb_143629_090 0.1797018922 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
11 Hb_006499_010 0.1797697281 - - -
12 Hb_000805_090 0.1804784006 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
13 Hb_001606_070 0.1820509899 - - fimbrin, putative [Ricinus communis]
14 Hb_002301_320 0.1830561922 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
15 Hb_003497_030 0.1837550591 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_001488_100 0.1849751443 - - -
17 Hb_008085_040 0.1851934456 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
18 Hb_002248_050 0.1854985513 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
19 Hb_001157_030 0.1858607584 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
20 Hb_003747_240 0.188198787 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000951_060 Hb_000951_060 Hb_002835_170 Hb_002835_170 Hb_000951_060--Hb_002835_170 Hb_002849_210 Hb_002849_210 Hb_000951_060--Hb_002849_210 Hb_000123_110 Hb_000123_110 Hb_000951_060--Hb_000123_110 Hb_001396_230 Hb_001396_230 Hb_000951_060--Hb_001396_230 Hb_001478_050 Hb_001478_050 Hb_000951_060--Hb_001478_050 Hb_006551_010 Hb_006551_010 Hb_000951_060--Hb_006551_010 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_001518_020 Hb_001518_020 Hb_002849_210--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_002849_210--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002849_210--Hb_009026_050 Hb_000179_050 Hb_000179_050 Hb_002849_210--Hb_000179_050 Hb_000339_070 Hb_000339_070 Hb_002849_210--Hb_000339_070 Hb_000124_020 Hb_000124_020 Hb_002849_210--Hb_000124_020 Hb_001514_190 Hb_001514_190 Hb_000123_110--Hb_001514_190 Hb_006499_010 Hb_006499_010 Hb_000123_110--Hb_006499_010 Hb_005867_040 Hb_005867_040 Hb_000123_110--Hb_005867_040 Hb_004522_040 Hb_004522_040 Hb_000123_110--Hb_004522_040 Hb_000123_110--Hb_002849_210 Hb_031403_010 Hb_031403_010 Hb_000123_110--Hb_031403_010 Hb_005779_100 Hb_005779_100 Hb_001396_230--Hb_005779_100 Hb_024952_010 Hb_024952_010 Hb_001396_230--Hb_024952_010 Hb_008085_040 Hb_008085_040 Hb_001396_230--Hb_008085_040 Hb_002739_110 Hb_002739_110 Hb_001396_230--Hb_002739_110 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_002291_030 Hb_002291_030 Hb_001478_050--Hb_002291_030 Hb_005455_070 Hb_005455_070 Hb_001478_050--Hb_005455_070 Hb_002326_030 Hb_002326_030 Hb_001478_050--Hb_002326_030 Hb_008695_190 Hb_008695_190 Hb_001478_050--Hb_008695_190 Hb_007229_060 Hb_007229_060 Hb_001478_050--Hb_007229_060 Hb_000258_430 Hb_000258_430 Hb_006551_010--Hb_000258_430 Hb_000313_380 Hb_000313_380 Hb_006551_010--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_006551_010--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_006551_010--Hb_000805_090 Hb_001140_200 Hb_001140_200 Hb_006551_010--Hb_001140_200 Hb_011174_070 Hb_011174_070 Hb_006551_010--Hb_011174_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19628 0.810673 0 0 1.48953 2.58663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53166 2.18771 4.24231 0.364567 0

CAGE analysis