Hb_000951_120

Information

Type -
Description -
Location Contig951: 187813-195506
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08340g
description POPTRDRAFT_649770; hypothetical protein
nr
ID XP_012074572.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
swissprot
ID O60094
description DNA polymerase V OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol5 PE=1 SV=2
trembl
ID A0A067KVQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09921 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase v-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000951_120 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
2 Hb_002374_450 0.0989885295 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
3 Hb_032631_070 0.1044560238 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
4 Hb_002075_030 0.1058602039 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
5 Hb_158092_100 0.1134601721 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
6 Hb_001649_030 0.1149829538 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
7 Hb_003752_090 0.1151431404 - - chitinase, putative [Ricinus communis]
8 Hb_001269_500 0.1160815727 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
9 Hb_009687_020 0.1166621264 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
10 Hb_000579_040 0.1168643142 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
11 Hb_025194_090 0.117623353 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
12 Hb_002305_010 0.1176399883 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_002005_040 0.1183110973 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000107_590 0.1193644915 - - PREDICTED: tricalbin-3 [Jatropha curcas]
15 Hb_001348_090 0.1205741508 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
16 Hb_002759_120 0.1206711359 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009288_040 0.1217647742 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
18 Hb_004710_020 0.1218059911 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_006829_080 0.1218217187 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_004055_160 0.1242769247 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000951_120 Hb_000951_120 Hb_002374_450 Hb_002374_450 Hb_000951_120--Hb_002374_450 Hb_032631_070 Hb_032631_070 Hb_000951_120--Hb_032631_070 Hb_002075_030 Hb_002075_030 Hb_000951_120--Hb_002075_030 Hb_158092_100 Hb_158092_100 Hb_000951_120--Hb_158092_100 Hb_001649_030 Hb_001649_030 Hb_000951_120--Hb_001649_030 Hb_003752_090 Hb_003752_090 Hb_000951_120--Hb_003752_090 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000579_040 Hb_000579_040 Hb_032631_070--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_032631_070--Hb_007441_310 Hb_032631_070--Hb_002075_030 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_138585_030 Hb_138585_030 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_002075_030--Hb_000579_040 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_158092_100--Hb_002044_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_004055_160 Hb_004055_160 Hb_158092_100--Hb_004055_160 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003994_080 Hb_003994_080 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10431 0.194973 0.748145 0.5354 0.0504623 0.235127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138913 0.245967 0.0874108 0.277909 1.26781

CAGE analysis