Hb_000953_010

Information

Type -
Description -
Location Contig953: 10790-12377
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO61027.1
description hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FC31
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0425012mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ctr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63447: 11644-11750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_010 0.0 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
2 Hb_000803_190 0.0609227786 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
3 Hb_004734_060 0.0609817791 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
4 Hb_000836_360 0.0666807128 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
5 Hb_000173_400 0.0694938547 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
6 Hb_033152_080 0.0749830836 - - RNA-binding protein Nova-1, putative [Ricinus communis]
7 Hb_156850_030 0.075703199 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
8 Hb_175338_030 0.0767831838 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
9 Hb_002307_100 0.0772753633 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
10 Hb_007757_110 0.0778485388 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
11 Hb_004837_040 0.0790730305 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
12 Hb_001516_100 0.0795456673 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_005307_030 0.0834507845 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
14 Hb_001728_100 0.0834574619 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
15 Hb_004204_080 0.0837032908 - - diacylglycerol kinase, theta, putative [Ricinus communis]
16 Hb_005324_010 0.0839038011 - - Chaperone protein dnaJ, putative [Ricinus communis]
17 Hb_002154_030 0.085154561 - - RNA binding protein, putative [Ricinus communis]
18 Hb_004055_040 0.0864423272 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
19 Hb_000031_050 0.0878078965 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
20 Hb_001141_330 0.0883349727 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]

Gene co-expression network

sample Hb_000953_010 Hb_000953_010 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_000803_190--Hb_004734_060 Hb_000803_190--Hb_033152_080 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_004734_060--Hb_033152_080 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_000836_360--Hb_001516_100 Hb_000836_360--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000836_360--Hb_005324_010 Hb_004055_040 Hb_004055_040 Hb_000173_400--Hb_004055_040 Hb_000173_400--Hb_004734_060 Hb_002928_060 Hb_002928_060 Hb_000173_400--Hb_002928_060 Hb_000173_400--Hb_000803_190 Hb_001771_130 Hb_001771_130 Hb_000173_400--Hb_001771_130 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_033152_080--Hb_000184_130 Hb_033152_080--Hb_000209_020 Hb_000032_320 Hb_000032_320 Hb_156850_030--Hb_000032_320 Hb_001728_100 Hb_001728_100 Hb_156850_030--Hb_001728_100 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_004204_080 Hb_004204_080 Hb_156850_030--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_156850_030--Hb_000077_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3789 16.068 4.5381 4.45807 16.3071 23.7749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4293 10.6491 20.4107 8.45377 3.99989

CAGE analysis