Hb_000953_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig953: 55711-61839
Sequence    

Annotation

kegg
ID rcu:RCOM_0383030
description hypothetical protein
nr
ID XP_012066438.1
description PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
swissprot
ID Q0WPF2
description Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana GN=PCFS4 PE=1 SV=1
trembl
ID A0A067L2I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23616 PE=4 SV=1
Gene Ontology
ID GO:0046872
description enth vhs family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63459: 55745-56091 , PASA_asmbl_63460: 56106-63048 , PASA_asmbl_63461: 58185-59579 , PASA_asmbl_63462: 59675-59858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_050 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
2 Hb_028207_040 0.1000890847 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
3 Hb_005496_180 0.1018277226 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
4 Hb_003055_140 0.1020697776 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
5 Hb_002572_050 0.1089363508 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
6 Hb_009028_010 0.1099848893 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
7 Hb_001629_060 0.1100424583 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
8 Hb_010921_030 0.1120958591 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
9 Hb_000442_010 0.1161000814 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
10 Hb_001525_010 0.1182838507 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
11 Hb_004899_040 0.1185262653 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
12 Hb_001862_110 0.1186254325 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_001369_570 0.1187952091 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
14 Hb_125126_010 0.1235043028 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
15 Hb_003411_030 0.1239413065 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
16 Hb_005188_040 0.1239490379 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
17 Hb_008511_100 0.124412577 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
18 Hb_000866_210 0.1244843929 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
19 Hb_000205_240 0.125266453 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000373_100 0.1261967773 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000953_050 Hb_000953_050 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_005496_180 Hb_005496_180 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_002572_050 Hb_002572_050 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_001525_010 Hb_001525_010 Hb_028207_040--Hb_001525_010 Hb_003078_050 Hb_003078_050 Hb_028207_040--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_000069_230 Hb_000069_230 Hb_028207_040--Hb_000069_230 Hb_005496_180--Hb_002572_050 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_000442_010 Hb_000442_010 Hb_003055_140--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_003055_140--Hb_003728_040 Hb_003055_140--Hb_001629_060 Hb_001104_170 Hb_001104_170 Hb_003055_140--Hb_001104_170 Hb_000866_210 Hb_000866_210 Hb_003055_140--Hb_000866_210 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_144744_010 Hb_144744_010 Hb_009028_010--Hb_144744_010 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_001541_250 Hb_001541_250 Hb_009028_010--Hb_001541_250 Hb_001935_140 Hb_001935_140 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_007054_040 Hb_007054_040 Hb_009028_010--Hb_007054_040 Hb_002007_160 Hb_002007_160 Hb_001629_060--Hb_002007_160 Hb_006117_080 Hb_006117_080 Hb_001629_060--Hb_006117_080 Hb_001629_060--Hb_000442_010 Hb_000479_070 Hb_000479_070 Hb_001629_060--Hb_000479_070 Hb_009150_020 Hb_009150_020 Hb_001629_060--Hb_009150_020 Hb_000015_170 Hb_000015_170 Hb_001629_060--Hb_000015_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31204 26.2982 5.84764 6.60826 5.0263 4.83365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.64028 7.38599 5.96836 5.18739 6.1481

CAGE analysis