Hb_000953_060

Information

Type -
Description -
Location Contig953: 64256-64783
Sequence    

Annotation

kegg
ID vvi:100853778
description putative phytosulfokines 6
nr
ID XP_003632753.1
description PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
swissprot
ID Q8LA14
description Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2 SV=2
trembl
ID D7TJ24
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03870 PE=4 SV=1
Gene Ontology
ID GO:0005576
description phytosulfokines 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63464: 64052-64780
cDNA
(Sanger)
(ID:Location)		 001_G17.ab1: 64137-64780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_060 0.0 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
2 Hb_080530_020 0.1505103172 - - -
3 Hb_181320_010 0.1652978366 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
4 Hb_000861_030 0.1670965138 - - -
5 Hb_176117_010 0.1751562473 - - Cold-inducible RNA-binding protein [Morus notabilis]
6 Hb_000122_140 0.1798007341 - - -
7 Hb_005016_150 0.1891451939 - - -
8 Hb_006901_040 0.1898175334 - - conserved hypothetical protein [Ricinus communis]
9 Hb_144898_010 0.1909531012 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
10 Hb_000025_310 0.1953325279 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000213_060 0.1970193064 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
12 Hb_000270_500 0.1977042078 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
13 Hb_012807_080 0.1980274904 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
14 Hb_000200_040 0.2003661698 - - -
15 Hb_005000_100 0.201673804 - - PCI domain-containing protein 2 [Morus notabilis]
16 Hb_000891_040 0.2020236722 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
17 Hb_001811_060 0.2038754153 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
18 Hb_001722_020 0.2048197689 - - -
19 Hb_000256_270 0.2063598891 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
20 Hb_003581_020 0.2073521035 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000953_060 Hb_000953_060 Hb_080530_020 Hb_080530_020 Hb_000953_060--Hb_080530_020 Hb_181320_010 Hb_181320_010 Hb_000953_060--Hb_181320_010 Hb_000861_030 Hb_000861_030 Hb_000953_060--Hb_000861_030 Hb_176117_010 Hb_176117_010 Hb_000953_060--Hb_176117_010 Hb_000122_140 Hb_000122_140 Hb_000953_060--Hb_000122_140 Hb_005016_150 Hb_005016_150 Hb_000953_060--Hb_005016_150 Hb_000211_070 Hb_000211_070 Hb_080530_020--Hb_000211_070 Hb_000213_060 Hb_000213_060 Hb_080530_020--Hb_000213_060 Hb_000270_500 Hb_000270_500 Hb_080530_020--Hb_000270_500 Hb_006901_040 Hb_006901_040 Hb_080530_020--Hb_006901_040 Hb_080530_020--Hb_005016_150 Hb_181320_010--Hb_176117_010 Hb_144898_010 Hb_144898_010 Hb_181320_010--Hb_144898_010 Hb_181320_010--Hb_005016_150 Hb_004662_010 Hb_004662_010 Hb_181320_010--Hb_004662_010 Hb_000891_040 Hb_000891_040 Hb_181320_010--Hb_000891_040 Hb_181320_010--Hb_000270_500 Hb_005410_040 Hb_005410_040 Hb_000861_030--Hb_005410_040 Hb_000861_030--Hb_000891_040 Hb_056506_050 Hb_056506_050 Hb_000861_030--Hb_056506_050 Hb_004883_060 Hb_004883_060 Hb_000861_030--Hb_004883_060 Hb_004342_030 Hb_004342_030 Hb_000861_030--Hb_004342_030 Hb_176117_010--Hb_005016_150 Hb_176117_010--Hb_000270_500 Hb_176117_010--Hb_144898_010 Hb_000200_040 Hb_000200_040 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_007380_110 Hb_007380_110 Hb_000122_140--Hb_007380_110 Hb_012305_040 Hb_012305_040 Hb_000122_140--Hb_012305_040 Hb_000122_140--Hb_144898_010 Hb_004243_010 Hb_004243_010 Hb_000122_140--Hb_004243_010 Hb_065525_030 Hb_065525_030 Hb_000122_140--Hb_065525_030 Hb_001675_060 Hb_001675_060 Hb_005016_150--Hb_001675_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
658.812 122.28 157.194 63.9932 753.931 1884.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
260.887 338.653 52.0255 467.774 1.13527

CAGE analysis