Hb_000953_080

Information

Type -
Description -
Location Contig953: 112066-113667
Sequence    

Annotation

kegg
ID rcu:RCOM_0383350
description ATP binding protein, putative
nr
ID XP_012066510.1
description PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
swissprot
ID Q9LZR8
description PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana GN=At5g03700 PE=1 SV=1
trembl
ID A0A067LDW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23620 PE=4 SV=1
Gene Ontology
ID GO:0005794
description pan domain-containing protein at5g03700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63465: 112640-113150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_080 0.0 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
2 Hb_000031_330 0.1984596273 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
3 Hb_000112_100 0.2029413972 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_001456_050 0.2054800649 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_055147_020 0.2116816833 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
6 Hb_010598_010 0.2192613136 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
7 Hb_001195_210 0.2201144291 - - -
8 Hb_002044_110 0.2258118514 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
9 Hb_003010_010 0.2270879902 - - PREDICTED: uncharacterized protein LOC105633673 [Jatropha curcas]
10 Hb_000111_120 0.2272320924 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_004218_220 0.227457533 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_003875_040 0.2277917103 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
13 Hb_000866_320 0.2317096936 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_013358_030 0.2322974266 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
15 Hb_000172_310 0.2327337046 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
16 Hb_000509_090 0.2333890987 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_007044_220 0.2392272254 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_096878_010 0.2414525304 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
19 Hb_000465_350 0.2417571031 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2 [Jatropha curcas]
20 Hb_008948_060 0.2422472559 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000953_080 Hb_000953_080 Hb_000031_330 Hb_000031_330 Hb_000953_080--Hb_000031_330 Hb_000112_100 Hb_000112_100 Hb_000953_080--Hb_000112_100 Hb_001456_050 Hb_001456_050 Hb_000953_080--Hb_001456_050 Hb_055147_020 Hb_055147_020 Hb_000953_080--Hb_055147_020 Hb_010598_010 Hb_010598_010 Hb_000953_080--Hb_010598_010 Hb_001195_210 Hb_001195_210 Hb_000953_080--Hb_001195_210 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_000031_330--Hb_001195_210 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_000116_200 Hb_000116_200 Hb_000031_330--Hb_000116_200 Hb_020178_010 Hb_020178_010 Hb_000112_100--Hb_020178_010 Hb_002918_130 Hb_002918_130 Hb_000112_100--Hb_002918_130 Hb_005946_120 Hb_005946_120 Hb_000112_100--Hb_005946_120 Hb_000112_100--Hb_000031_330 Hb_000007_430 Hb_000007_430 Hb_000112_100--Hb_000007_430 Hb_001287_060 Hb_001287_060 Hb_001456_050--Hb_001287_060 Hb_000832_280 Hb_000832_280 Hb_001456_050--Hb_000832_280 Hb_000002_360 Hb_000002_360 Hb_001456_050--Hb_000002_360 Hb_000216_050 Hb_000216_050 Hb_001456_050--Hb_000216_050 Hb_002028_160 Hb_002028_160 Hb_001456_050--Hb_002028_160 Hb_001922_060 Hb_001922_060 Hb_001456_050--Hb_001922_060 Hb_001416_170 Hb_001416_170 Hb_055147_020--Hb_001416_170 Hb_000172_310 Hb_000172_310 Hb_055147_020--Hb_000172_310 Hb_000975_130 Hb_000975_130 Hb_055147_020--Hb_000975_130 Hb_004218_220 Hb_004218_220 Hb_055147_020--Hb_004218_220 Hb_096878_010 Hb_096878_010 Hb_055147_020--Hb_096878_010 Hb_000111_120 Hb_000111_120 Hb_055147_020--Hb_000111_120 Hb_004096_010 Hb_004096_010 Hb_010598_010--Hb_004096_010 Hb_072997_010 Hb_072997_010 Hb_010598_010--Hb_072997_010 Hb_009070_030 Hb_009070_030 Hb_010598_010--Hb_009070_030 Hb_055440_010 Hb_055440_010 Hb_010598_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_010598_010--Hb_001002_090 Hb_001288_020 Hb_001288_020 Hb_010598_010--Hb_001288_020 Hb_005672_030 Hb_005672_030 Hb_001195_210--Hb_005672_030 Hb_015934_100 Hb_015934_100 Hb_001195_210--Hb_015934_100 Hb_000853_010 Hb_000853_010 Hb_001195_210--Hb_000853_010 Hb_000007_070 Hb_000007_070 Hb_001195_210--Hb_000007_070 Hb_146901_020 Hb_146901_020 Hb_001195_210--Hb_146901_020 Hb_001195_210--Hb_001416_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0815056 2.80362 3.75854 5.50336 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106666 1.17445 0 3.52899 0

CAGE analysis