Hb_000953_120

Information

Type -
Description -
Location Contig953: 133228-133513
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63468: 133390-136256
cDNA
(Sanger)
(ID:Location)		 003_G14.ab1: 133422-135659 , 010_D08.ab1: 133397-135478 , 013_K04.ab1: 133422-135569 , 017_E04.ab1: 133422-135560 , 018_L03.ab1: 133422-135614 , 019_A15.ab1: 133422-135541 , 024_N17.ab1: 133390-135374 , 032_M20.ab1: 133422-135423 , 035_D01.ab1: 133390-135587 , 047_L11.ab1: 133390-135574

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_120 0.0 - - -
2 Hb_041601_010 0.1222680292 - - -
3 Hb_009119_010 0.1306374955 - - -
4 Hb_002016_030 0.1470167549 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_080 0.1563776934 - - -
6 Hb_162090_010 0.1649059722 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
7 Hb_000034_090 0.1726195031 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
8 Hb_005107_020 0.1750945625 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
9 Hb_002972_060 0.1765663628 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_006162_020 0.177919119 - - -
11 Hb_006794_010 0.1921724528 - - elicitor-responsive protein [Hevea brasiliensis]
12 Hb_022614_010 0.1961430131 - - -
13 Hb_000270_540 0.2006281204 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
14 Hb_017014_020 0.202824626 - - -
15 Hb_000251_020 0.2124488135 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
16 Hb_011200_010 0.2146444757 - - -
17 Hb_001089_080 0.2217770777 - - hypothetical protein glysoja_044047 [Glycine soja]
18 Hb_005318_010 0.222130234 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
19 Hb_005723_070 0.2260881744 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
20 Hb_008096_020 0.2285521165 - - -

Gene co-expression network

sample Hb_000953_120 Hb_000953_120 Hb_041601_010 Hb_041601_010 Hb_000953_120--Hb_041601_010 Hb_009119_010 Hb_009119_010 Hb_000953_120--Hb_009119_010 Hb_002016_030 Hb_002016_030 Hb_000953_120--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_000953_120--Hb_000025_080 Hb_162090_010 Hb_162090_010 Hb_000953_120--Hb_162090_010 Hb_000034_090 Hb_000034_090 Hb_000953_120--Hb_000034_090 Hb_000251_020 Hb_000251_020 Hb_041601_010--Hb_000251_020 Hb_041601_010--Hb_000034_090 Hb_041601_010--Hb_162090_010 Hb_041601_010--Hb_002016_030 Hb_041601_010--Hb_000025_080 Hb_002972_060 Hb_002972_060 Hb_009119_010--Hb_002972_060 Hb_009119_010--Hb_002016_030 Hb_009119_010--Hb_000025_080 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_010367_020 Hb_010367_020 Hb_002016_030--Hb_010367_020 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010 Hb_022614_010 Hb_022614_010 Hb_162090_010--Hb_022614_010 Hb_006162_020 Hb_006162_020 Hb_162090_010--Hb_006162_020 Hb_162090_010--Hb_017014_020 Hb_005107_020 Hb_005107_020 Hb_162090_010--Hb_005107_020 Hb_000034_090--Hb_005107_020 Hb_000034_090--Hb_006162_020 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_012675_080 Hb_012675_080 Hb_000034_090--Hb_012675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35614 4.9622 6.42333 779.108 7.71639 472.108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0811 36.7757 13.0443 66.3312 6.12435

CAGE analysis