Hb_000954_020

Information

Type -
Description -
Location Contig954: 51138-51550
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63481: 47324-50470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000954_020 0.0 - - -
2 Hb_001951_270 0.1697985909 - - -
3 Hb_009659_010 0.180642992 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
4 Hb_000191_020 0.1845479697 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000805_130 0.1855980636 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003607_170 0.1960923572 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
7 Hb_000617_090 0.1966569486 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
8 Hb_000230_150 0.1974542138 - - sugar transporter, putative [Ricinus communis]
9 Hb_000963_030 0.20120108 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
10 Hb_001634_040 0.2038793719 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
11 Hb_000975_250 0.2044912657 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
12 Hb_001097_020 0.2054589932 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
13 Hb_001214_160 0.2071821903 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_124055_010 0.2099466719 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
15 Hb_000948_210 0.211482926 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
16 Hb_144598_020 0.2149927713 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
17 Hb_001045_080 0.215283461 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
18 Hb_004724_160 0.2153442592 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
19 Hb_126216_010 0.2154069293 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
20 Hb_026398_010 0.2157212162 - - hypothetical protein B456_010G132100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000954_020 Hb_000954_020 Hb_001951_270 Hb_001951_270 Hb_000954_020--Hb_001951_270 Hb_009659_010 Hb_009659_010 Hb_000954_020--Hb_009659_010 Hb_000191_020 Hb_000191_020 Hb_000954_020--Hb_000191_020 Hb_000805_130 Hb_000805_130 Hb_000954_020--Hb_000805_130 Hb_003607_170 Hb_003607_170 Hb_000954_020--Hb_003607_170 Hb_000617_090 Hb_000617_090 Hb_000954_020--Hb_000617_090 Hb_126216_010 Hb_126216_010 Hb_001951_270--Hb_126216_010 Hb_001951_270--Hb_009659_010 Hb_000645_190 Hb_000645_190 Hb_001951_270--Hb_000645_190 Hb_001951_270--Hb_003607_170 Hb_026398_010 Hb_026398_010 Hb_001951_270--Hb_026398_010 Hb_000975_250 Hb_000975_250 Hb_001951_270--Hb_000975_250 Hb_009659_010--Hb_126216_010 Hb_004421_020 Hb_004421_020 Hb_009659_010--Hb_004421_020 Hb_021924_010 Hb_021924_010 Hb_009659_010--Hb_021924_010 Hb_003988_040 Hb_003988_040 Hb_009659_010--Hb_003988_040 Hb_009659_010--Hb_000975_250 Hb_000035_430 Hb_000035_430 Hb_000191_020--Hb_000035_430 Hb_089100_020 Hb_089100_020 Hb_000191_020--Hb_089100_020 Hb_024714_060 Hb_024714_060 Hb_000191_020--Hb_024714_060 Hb_000896_120 Hb_000896_120 Hb_000191_020--Hb_000896_120 Hb_001604_030 Hb_001604_030 Hb_000191_020--Hb_001604_030 Hb_001268_080 Hb_001268_080 Hb_000191_020--Hb_001268_080 Hb_007575_070 Hb_007575_070 Hb_000805_130--Hb_007575_070 Hb_001634_040 Hb_001634_040 Hb_000805_130--Hb_001634_040 Hb_000172_420 Hb_000172_420 Hb_000805_130--Hb_000172_420 Hb_000062_390 Hb_000062_390 Hb_000805_130--Hb_000062_390 Hb_008948_050 Hb_008948_050 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010 Hb_003607_170--Hb_003988_040 Hb_003607_170--Hb_000617_090 Hb_008847_020 Hb_008847_020 Hb_003607_170--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_003607_170--Hb_010883_150 Hb_000526_150 Hb_000526_150 Hb_003607_170--Hb_000526_150 Hb_005463_060 Hb_005463_060 Hb_003607_170--Hb_005463_060 Hb_000312_090 Hb_000312_090 Hb_000617_090--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000617_090--Hb_003125_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17234 0.182442 0.7055 0.57974 0 0.906229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88733 3.27087 1.2663 0.552287 0

CAGE analysis