Hb_000956_010

Information

Type -
Description -
Location Contig956: 8416-16179
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002618mg
description hypothetical protein
nr
ID XP_012068315.1
description PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
swissprot
ID P42731
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
trembl
ID M5XRJ2
description Polyadenylate-binding protein OS=Prunus persica GN=PRUPE_ppa002618mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63543: 8388-16178
cDNA
(Sanger)
(ID:Location)		 022_P24.ab1: 8391-9768 , 023_K06.ab1: 8390-9758 , 032_J05.ab1: 8391-9836

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_010 0.0 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
2 Hb_001427_120 0.0465913496 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
3 Hb_000376_050 0.0503186455 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_006693_030 0.0623993637 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
5 Hb_002603_100 0.0626038064 - - ATATH9, putative [Ricinus communis]
6 Hb_022250_040 0.065685135 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
7 Hb_023386_080 0.0678683753 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
8 Hb_000703_140 0.0718529435 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
9 Hb_001243_050 0.0725822739 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
10 Hb_004899_320 0.0743136122 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
11 Hb_000883_050 0.0743371201 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
12 Hb_001718_100 0.0746189468 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
13 Hb_004662_030 0.0753548429 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
14 Hb_000329_040 0.076033397 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
15 Hb_002368_050 0.076776735 - - conserved hypothetical protein [Ricinus communis]
16 Hb_027472_180 0.0774663086 - - hypothetical protein L484_016229 [Morus notabilis]
17 Hb_000975_290 0.0787427743 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
18 Hb_071736_020 0.0788829576 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_026988_020 0.0791003318 - - outward rectifying K+ channel [Hevea brasiliensis]
20 Hb_002025_320 0.0803654505 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]

Gene co-expression network

sample Hb_000956_010 Hb_000956_010 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_001427_120--Hb_022250_040 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_002368_050 Hb_002368_050 Hb_006693_030--Hb_002368_050 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_011224_080 Hb_011224_080 Hb_006693_030--Hb_011224_080 Hb_000029_030 Hb_000029_030 Hb_006693_030--Hb_000029_030 Hb_006693_030--Hb_004662_030 Hb_002603_100--Hb_023386_080 Hb_002603_100--Hb_022250_040 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_000329_040 Hb_000329_040 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_023386_080--Hb_000376_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
408.05 86.7412 88.5286 111.79 436.102 501.385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
556.929 614.637 570.832 127.586 60.4269

CAGE analysis