Hb_000956_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig956: 32916-39500
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02580g
description hypothetical protein
nr
ID XP_012068313.1
description PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
swissprot
ID Q93VY3
description NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
trembl
ID R4N5R6
description NAC transcription factor 061 OS=Jatropha curcas GN=JCGZ_16111 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 72-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63544: 33410-38790 , PASA_asmbl_63547: 38809-39260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_030 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
2 Hb_004198_010 0.0443645158 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
3 Hb_003434_060 0.0498309611 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
4 Hb_000120_500 0.0510469292 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
5 Hb_002097_090 0.0632210696 - - Splicing factor 3A subunit, putative [Ricinus communis]
6 Hb_004450_010 0.0652876704 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
7 Hb_000236_370 0.067450002 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
8 Hb_061908_010 0.0691169946 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
9 Hb_028639_060 0.0728901576 - - transporter, putative [Ricinus communis]
10 Hb_000390_060 0.0736436785 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
11 Hb_185830_020 0.0746441816 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000645_150 0.0746739614 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000803_300 0.0759018008 - - nuclear movement protein nudc, putative [Ricinus communis]
14 Hb_003656_130 0.0760348472 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
15 Hb_000364_060 0.0762069978 - - JHL03K20.4 [Jatropha curcas]
16 Hb_003602_040 0.0780828043 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_009620_040 0.0790156188 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
18 Hb_005016_170 0.0794624366 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002272_180 0.0799997742 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
20 Hb_002174_060 0.0800637183 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]

Gene co-expression network

sample Hb_000956_030 Hb_000956_030 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_004198_010--Hb_003434_060 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_004198_010--Hb_000120_500 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000120_500 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000120_500--Hb_000390_060 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_002272_180 Hb_002272_180 Hb_004450_010--Hb_002272_180 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040 Hb_000236_370--Hb_000645_150 Hb_000236_370--Hb_002097_090 Hb_000236_370--Hb_028639_060 Hb_012305_070 Hb_012305_070 Hb_000236_370--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000236_370--Hb_000186_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4981 7.50698 5.78539 7.90456 21.2745 29.6115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6178 13.0353 9.59929 10.0989 5.07715

CAGE analysis