Hb_000956_040

Information

Type -
Description -
Location Contig956: 42549-48439
Sequence    

Annotation

kegg
ID rcu:RCOM_1589660
description protein binding protein, putative
nr
ID XP_012068316.1
description PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID A0A067LB63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16112 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase hip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63548: 42709-48427 , PASA_asmbl_63549: 43320-43496 , PASA_asmbl_63550: 43548-43799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_040 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
2 Hb_005305_100 0.0615437489 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
3 Hb_000034_110 0.0651490856 - - sentrin/sumo-specific protease, putative [Ricinus communis]
4 Hb_033152_090 0.0672774382 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
5 Hb_001009_120 0.0675234477 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
6 Hb_010287_020 0.0714825441 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
7 Hb_004774_090 0.0728891719 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
8 Hb_009178_010 0.0737706142 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
9 Hb_008725_050 0.0746028469 - - syntaxin, putative [Ricinus communis]
10 Hb_004718_060 0.0754143516 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_000137_010 0.0754669479 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
12 Hb_000270_700 0.0793945331 - - PREDICTED: protease Do-like 9 [Populus euphratica]
13 Hb_000030_140 0.0794724153 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
14 Hb_003540_250 0.0798682566 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
15 Hb_000640_190 0.0798822535 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
16 Hb_000179_190 0.0813091925 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
17 Hb_002965_050 0.0825687713 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
18 Hb_060094_010 0.083089715 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_005403_010 0.0841338735 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
20 Hb_000110_350 0.0845137314 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000956_040 Hb_000956_040 Hb_005305_100 Hb_005305_100 Hb_000956_040--Hb_005305_100 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_000270_700 Hb_000270_700 Hb_000034_110--Hb_000270_700 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_009178_010 Hb_009178_010 Hb_000034_110--Hb_009178_010 Hb_002686_410 Hb_002686_410 Hb_000034_110--Hb_002686_410 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_000640_190 Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_000258_420 Hb_000258_420 Hb_033152_090--Hb_000258_420 Hb_033152_090--Hb_001009_120 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130 Hb_001009_120--Hb_000640_190 Hb_006452_180 Hb_006452_180 Hb_001009_120--Hb_006452_180 Hb_004319_050 Hb_004319_050 Hb_001009_120--Hb_004319_050 Hb_001009_120--Hb_009178_010 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_111552_010 Hb_111552_010 Hb_004774_090--Hb_111552_010 Hb_004324_360 Hb_004324_360 Hb_004774_090--Hb_004324_360 Hb_000975_210 Hb_000975_210 Hb_004774_090--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004774_090--Hb_000788_030 Hb_000137_010 Hb_000137_010 Hb_004774_090--Hb_000137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2444 45.2671 49.4896 29.6584 11.9988 16.0216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1799 11.9686 13.4966 23.4622 29.3934

CAGE analysis