Hb_000956_070

Information

Type -
Description -
Location Contig956: 82554-85381
Sequence    

Annotation

kegg
ID rcu:RCOM_1589790
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012068323.1
description PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
swissprot
ID Q3EDL4
description Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2
trembl
ID A0A067L3F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16115 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable serine threonine-protein kinase at1g01540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63552: 82956-83655 , PASA_asmbl_63553: 84812-85423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_070 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
2 Hb_004282_010 0.0513578646 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
3 Hb_006501_100 0.0807123283 - - malic enzyme, putative [Ricinus communis]
4 Hb_000014_080 0.0832557691 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
5 Hb_008727_040 0.106964278 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000127_080 0.1084489573 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
7 Hb_002818_170 0.1087883149 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
8 Hb_005731_070 0.1128996127 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000011_370 0.1131624417 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
10 Hb_007017_100 0.1168221238 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
11 Hb_008566_080 0.118039444 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
12 Hb_022250_160 0.1208918622 - - respiratory burst oxidase A [Manihot esculenta]
13 Hb_001040_200 0.1212093625 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
14 Hb_007386_030 0.1216751687 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
15 Hb_005144_080 0.1240572857 - - Serine carboxypeptidase, putative [Ricinus communis]
16 Hb_001138_070 0.1251960962 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
17 Hb_006277_030 0.1252480661 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001568_010 0.1258597829 - - conserved hypothetical protein [Ricinus communis]
19 Hb_019026_050 0.1283406458 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002097_180 0.1288942135 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000956_070 Hb_000956_070 Hb_004282_010 Hb_004282_010 Hb_000956_070--Hb_004282_010 Hb_006501_100 Hb_006501_100 Hb_000956_070--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_000956_070--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_000956_070--Hb_008727_040 Hb_000127_080 Hb_000127_080 Hb_000956_070--Hb_000127_080 Hb_002818_170 Hb_002818_170 Hb_000956_070--Hb_002818_170 Hb_004282_010--Hb_006501_100 Hb_004282_010--Hb_000014_080 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_006277_030 Hb_006277_030 Hb_004282_010--Hb_006277_030 Hb_006501_100--Hb_006277_030 Hb_006501_100--Hb_002818_170 Hb_006501_100--Hb_000014_080 Hb_002025_380 Hb_002025_380 Hb_006501_100--Hb_002025_380 Hb_000014_080--Hb_001568_010 Hb_005731_070 Hb_005731_070 Hb_000014_080--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_000014_080--Hb_007386_030 Hb_012787_050 Hb_012787_050 Hb_008727_040--Hb_012787_050 Hb_008727_040--Hb_001568_010 Hb_085315_010 Hb_085315_010 Hb_008727_040--Hb_085315_010 Hb_006846_030 Hb_006846_030 Hb_008727_040--Hb_006846_030 Hb_000127_080--Hb_004282_010 Hb_000127_080--Hb_006501_100 Hb_164117_010 Hb_164117_010 Hb_000127_080--Hb_164117_010 Hb_000127_080--Hb_085315_010 Hb_007632_130 Hb_007632_130 Hb_000127_080--Hb_007632_130 Hb_002818_170--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002818_170--Hb_003189_010 Hb_002097_180 Hb_002097_180 Hb_002818_170--Hb_002097_180 Hb_002818_170--Hb_002025_380 Hb_002818_170--Hb_004282_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0488105 0.668032 1.58898 4.78199 0.0101965 0.0317472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0247662 0.0194861 0 3.11134 1.35548

CAGE analysis