Hb_000956_140

Information

Type -
Description -
Location Contig956: 215409-221020
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_140 0.0 - - -
2 Hb_137268_010 0.033311082 - - -
3 Hb_000083_190 0.0654521383 - - low affinity nitrate transporter, partial [Triticum aestivum]
4 Hb_052600_010 0.0737192107 - - -
5 Hb_001241_090 0.0738391253 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
6 Hb_140618_010 0.0738713154 - - -
7 Hb_005396_140 0.0763637305 - - -
8 Hb_001105_080 0.0821254552 - - -
9 Hb_005834_030 0.130061021 - - -
10 Hb_001534_020 0.1377352485 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003675_010 0.1397431864 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_141408_010 0.1512496218 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
13 Hb_000270_820 0.1615052764 - - -
14 Hb_135585_010 0.2101227425 - - -
15 Hb_000510_380 0.2125827573 - - -
16 Hb_000482_130 0.2125875598 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_012543_020 0.2125918398 - - -
18 Hb_185616_010 0.2125987052 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_061463_010 0.2126353174 - - Cucumisin precursor, putative [Ricinus communis]
20 Hb_002130_010 0.2126479665 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]

Gene co-expression network

sample Hb_000956_140 Hb_000956_140 Hb_137268_010 Hb_137268_010 Hb_000956_140--Hb_137268_010 Hb_000083_190 Hb_000083_190 Hb_000956_140--Hb_000083_190 Hb_052600_010 Hb_052600_010 Hb_000956_140--Hb_052600_010 Hb_001241_090 Hb_001241_090 Hb_000956_140--Hb_001241_090 Hb_140618_010 Hb_140618_010 Hb_000956_140--Hb_140618_010 Hb_005396_140 Hb_005396_140 Hb_000956_140--Hb_005396_140 Hb_137268_010--Hb_000083_190 Hb_137268_010--Hb_052600_010 Hb_137268_010--Hb_001241_090 Hb_137268_010--Hb_140618_010 Hb_137268_010--Hb_005396_140 Hb_000083_190--Hb_052600_010 Hb_000083_190--Hb_001241_090 Hb_000083_190--Hb_140618_010 Hb_000083_190--Hb_005396_140 Hb_052600_010--Hb_001241_090 Hb_052600_010--Hb_140618_010 Hb_052600_010--Hb_005396_140 Hb_001105_080 Hb_001105_080 Hb_052600_010--Hb_001105_080 Hb_005834_030 Hb_005834_030 Hb_052600_010--Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_052600_010--Hb_003675_010 Hb_001241_090--Hb_140618_010 Hb_001241_090--Hb_005396_140 Hb_001241_090--Hb_001105_080 Hb_001241_090--Hb_005834_030 Hb_001241_090--Hb_003675_010 Hb_140618_010--Hb_005396_140 Hb_140618_010--Hb_001105_080 Hb_140618_010--Hb_005834_030 Hb_140618_010--Hb_003675_010 Hb_005396_140--Hb_001105_080 Hb_005396_140--Hb_005834_030 Hb_005396_140--Hb_003675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.240326 0.0629773 0 0 0

CAGE analysis